View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_40 (Length: 545)
Name: NF8986_low_40
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_40 |
 | |
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| [»] scaffold1444 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 17107192 - 17107721
Alignment:
| Q |
1 |
aaaaacctagccaaccttttgaagctcacacatggggggtaaaagaaagacaaagttttaacaactattgtagacgtcaatctgctataggggaagagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
17107192 |
aaaaacctagccaaccttttgaagctcacacatggggtggaaaagaaagacaaagttttgacaactattgtatacgtccatctgctataggggaagagaa |
17107291 |
T |
|
| Q |
101 |
gtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcctttgcccaaaaccaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107292 |
gtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcctttgcccaaaaccaagat |
17107391 |
T |
|
| Q |
201 |
caatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatg |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107392 |
caatataaggtggatgaagtgaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatg |
17107491 |
T |
|
| Q |
301 |
caacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgt |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107492 |
caacaacagtttacatggtgctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgt |
17107591 |
T |
|
| Q |
401 |
tctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggtgcctgactcgtcttaaagtttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17107592 |
tctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggtgcctgactcgtcttaaagtttg |
17107691 |
T |
|
| Q |
501 |
atatagggggaaatattttgtgcaaataac |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17107692 |
atatagggggaaatattttgtgcaaataac |
17107721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 17117621 - 17117161
Alignment:
| Q |
18 |
tttgaagctcacacatggggggtaaaagaaagacaaagttttaacaactattgtagacgtcaatctgctataggggaagagaagtattgtgcattatccc |
117 |
Q |
| |
|
|||||| ||| ||| ||||| |||||||| ||| |||||| | | |||||||| ||| | ||| |||||||| ||||| |||||||||||| |||||| |
|
|
| T |
17117621 |
tttgaaactcgcacgtggggtgtaaaagagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcactatccc |
17117522 |
T |
|
| Q |
118 |
ttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcctttgcccaaaaccaagatcaatataaggtggatga |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| || |
|
|
| T |
17117521 |
taaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacga |
17117422 |
T |
|
| Q |
218 |
agtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatg |
317 |
Q |
| |
|
||| ||||||||||||||||| || ||| |||||||| || ||||||||||| | || |||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
17117421 |
agtgaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatg |
17117322 |
T |
|
| Q |
318 |
gtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctca |
417 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||| ||| | |||||| |
|
|
| T |
17117321 |
gtgccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctca |
17117222 |
T |
|
| Q |
418 |
aagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
478 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
17117221 |
aagtcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggt |
17117161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 61 - 385
Target Start/End: Original strand, 17004070 - 17004394
Alignment:
| Q |
61 |
acaactattgtagacgtcaatctgctataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaa |
160 |
Q |
| |
|
|||||||||||||| | | ||| |||||||| ||||| |||||||||||| ||||||| |||||||| | |||||||||| ||||||||||| || || |
|
|
| T |
17004070 |
acaactattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaa |
17004169 |
T |
|
| Q |
161 |
tattaaggtgatttcaagttcctttgcccaaaaccaagatcaatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattg |
260 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | || |||||| |||||||||||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
17004170 |
cattaaggtgatttcaagttcctttgccaaaaataaggaccaatatgtggtggatgaagtgaaaaaaattggagacaaagtggtgatgtgtcatagatta |
17004269 |
T |
|
| Q |
261 |
aatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaa |
360 |
Q |
| |
|
||||||||| | | ||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
17004270 |
aatttcaaaaatgttgtattttattgtcaccaagttaatgcaactacaacttacatggtgccattggtggctttagatggaaccaaagctaaggcactaa |
17004369 |
T |
|
| Q |
361 |
ctatttgtcaccatgatacaagagg |
385 |
Q |
| |
|
|| | || ||||||||||||||||| |
|
|
| T |
17004370 |
ctgtctgccaccatgatacaagagg |
17004394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 84 - 478
Target Start/End: Complemental strand, 17986803 - 17986409
Alignment:
| Q |
84 |
gctataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcct |
183 |
Q |
| |
|
|||||||| ||| | |||||||| |||| | |||| |||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
17986803 |
gctataggagaacacaagtattgcgcatcaaccctagaatcaatgatagatttcgccatttcaaagcttggaaaaaatattaagttgatttcaagttcct |
17986704 |
T |
|
| Q |
184 |
ttgcccaaaaccaagatcaatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtatttta |
283 |
Q |
| |
|
|||| ||||||||||| ||||||| || | ||||| |||||||||||||||||||| ||||||||||||| | | |||||| | | | |||||||| |
|
|
| T |
17986703 |
ttgcacaaaaccaagaccaatatatagtacaggaagtgaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtatttta |
17986604 |
T |
|
| Q |
284 |
ttgccaccaagttaatgcaacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaaga |
383 |
Q |
| |
|
|||||||||||| ||||||||| || ||||| || | || ||||| || |||||||||||||| ||||||||||| || || |||||||| || ||| |
|
|
| T |
17986603 |
ttgccaccaagtcaatgcaacatcaacatacatagttcctttagtggcctctgatggaactaaagcgaaggcactaacaatatgccaccatgacacgaga |
17986504 |
T |
|
| Q |
384 |
ggaatgaatcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
478 |
Q |
| |
|
|| ||| |||||||||| ||||||||| |||||||||||||||||||||| || || || || ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
17986503 |
ggtatggatcctgatgtgctttatgaagttctcaaagtcaagcctggaacaattccaatatgtcattttgttagcaacaaggccattgcatgggt |
17986409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 87 - 478
Target Start/End: Complemental strand, 17956638 - 17956247
Alignment:
| Q |
87 |
ataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcctttg |
186 |
Q |
| |
|
||||||||||| || |||||||| ||| || ||||||||||| ||||||| || ||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
17956638 |
ataggggaagacaaacattgtgcaccatcactagaatcaatgatggattttgcaatttcaaagcttggaaagaatatcaaagtgatgtcaagttcctttt |
17956539 |
T |
|
| Q |
187 |
cccaaaaccaagatcaatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattg |
286 |
Q |
| |
|
| |||| || || |||||| |||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||| | | |||| ||||| |
|
|
| T |
17956538 |
ctaaaaatcatgaccaatatgtggtggaagaagtgaataaaataggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattg |
17956439 |
T |
|
| Q |
287 |
ccaccaagttaatgcaacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagagga |
386 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||| |||||||||| || |||||||| ||| ||||||||||||| || |||||||||||||| |||| |
|
|
| T |
17956438 |
ccaccaagtcaatgcgacaacaacttacatggttccattggtggcatccgatggaaccaaatctaaggcactaacaatctgtcaccatgatactcgaggt |
17956339 |
T |
|
| Q |
387 |
atgaatcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
478 |
Q |
| |
|
||| ||||| |||| ||||| || |||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17956338 |
atggatcctaatgtgctttacgatgttctcaaagttaagcctggaactgtccctgtttgccattttattggcaacaaggccgttgcttgggt |
17956247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 84 - 478
Target Start/End: Complemental strand, 17945643 - 17945249
Alignment:
| Q |
84 |
gctataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcct |
183 |
Q |
| |
|
|||||||| |||||||| | ||||||| || || ||||||||||| |||| ||||| ||||||||||||| |||||||| ||||| |||||||| | |
|
|
| T |
17945643 |
gctataggagaagagaaacactgtgcatattcactagaatcaatgatggatttcgccatttcaaagcttggaaagaatattaaagtgatgtcaagttcat |
17945544 |
T |
|
| Q |
184 |
ttgcccaaaaccaagatcaatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtatttta |
283 |
Q |
| |
|
|| | |||| |||||| ||||||| |||||| ||||| | ||||| |||||||| |||||||||||||||||| ||||| | ||| | | | ||| || |
|
|
| T |
17945543 |
tttctcaaagccaagaccaatatatggtggaggaagtgagaaaaataggagacaacgcagtgatgtgtcatagaatgaatcttaaaaaggttggattcta |
17945444 |
T |
|
| Q |
284 |
ttgccaccaagttaatgcaacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaaga |
383 |
Q |
| |
|
||||||||| | || || ||||| ||||||||| |||||||||| || |||||||||||| | |||||||||||||| || ||||||||||||||| |
|
|
| T |
17945443 |
ttgccaccagatcaacgcgacaacgacttacatggttccattggtggcctctgatggaactaaatccaaggcactaactatctgccaccatgatacaaga |
17945344 |
T |
|
| Q |
384 |
ggaatgaatcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
478 |
Q |
| |
|
|| ||| ||||| || | || |||||| ||||| |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
17945343 |
ggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggt |
17945249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 476
Target Start/End: Complemental strand, 17999458 - 17999198
Alignment:
| Q |
216 |
gaagtaaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttaca |
315 |
Q |
| |
|
||||||| |||||||| |||||||| ||| ||||||||| || |||||||| | | | ||||||||||| |||||||| |||||| ||||| ||||| |
|
|
| T |
17999458 |
gaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttaca |
17999359 |
T |
|
| Q |
316 |
tggtgtcattggtggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttct |
415 |
Q |
| |
|
|||| | ||| |||| || ||||||| ||||| ||| ||| | || |||||||||||| |||||||| |||||||| || | || ||||| |||| |
|
|
| T |
17999358 |
tggtccctttgttggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgctcgatgaagttct |
17999259 |
T |
|
| Q |
416 |
caaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgg |
476 |
Q |
| |
|
|||||||||||| ||||| |||||| | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
17999258 |
caaagtcaagccaggaactatccctgtctgccattttgttggtaacaaggctgttgcttgg |
17999198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 162 - 467
Target Start/End: Complemental strand, 17258323 - 17258018
Alignment:
| Q |
162 |
attaaggtgatttcaagttcctttgcccaaaaccaagatcaatataaggtggatgaagtaaagaaaattggagacaaagcagtgatgtgtcatagattga |
261 |
Q |
| |
|
||||||| |||||||||| |||||| | |||||| || |||||| |||||| ||||| || ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
17258323 |
attaaggcgatttcaagtacctttggcgtaaaccaggaccaatatgtggtggaggaagtgaaaaaagttggagacaatgcagtgatgtgtcatagattga |
17258224 |
T |
|
| Q |
262 |
atttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattggtggcttcagatggaactaaagctaaggcactaac |
361 |
Q |
| |
|
||||| || | | ||||| ||||||||||||| | |||||||| | ||| |||| |||||||| || | |||||| |||||||||||| |||| |
|
|
| T |
17258223 |
atttcgaaaaagttgtattcaattgccaccaagtgcaagcaacaactgcttatgtggtatcattggtagcccccgatggaggtaaagctaaggccttaac |
17258124 |
T |
|
| Q |
362 |
tatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaac |
461 |
Q |
| |
|
| |||| |||||||| |||||||| |||||| |||| | ||||||||| ||| |||||| | ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
17258123 |
tgtttgccaccatgacacaagaggcatgaatgctgagttgctttatgaagctctaaaagtcgaacctggtaccatcccaatttgccatttcattggcaat |
17258024 |
T |
|
| Q |
462 |
aaggct |
467 |
Q |
| |
|
|||||| |
|
|
| T |
17258023 |
aaggct |
17258018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 3 - 90
Alignment:
| Q |
391 |
atcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
478 |
Q |
| |
|
|||||||||| || || ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3 |
atcctgatgtgctctacgaaattctcaaagtcaagcctggaactgtccctatttgccattttgttggtaacaaggccattgcttgggt |
90 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 34241423 - 34241456
Alignment:
| Q |
229 |
ttggagacaaagcagtgatgtgtcatagattgaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
34241423 |
ttggagacaaagcagtgatgtgtcataggttgaa |
34241456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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