View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_45 (Length: 525)
Name: NF8986_low_45
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 27877171 - 27876644
Alignment:
| Q |
1 |
tgtctcttagatatatatccaaataagtgtagaagtacaatcaatagtcatctcttagacatagaaattggtctccttgtaac----------------- |
83 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27877171 |
tgtctcttagatatatatccaaataagtgtagaagtacaatcaatagtcatctcttagacatagaaattggtctccttgtaacttcaaagtggtacttgc |
27877072 |
T |
|
| Q |
84 |
--atagatatgtttacattcaaatatgaaatatgtcaaactagaattttcattctaaaattcttatagctaaatgcactgaacattcttttttacccaaa |
181 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27877071 |
acatagatatgtttacatccaaatatgaaatatgtcaaactagaattttcattctaaaattcttatagctaaatgcactgaacattcttttttacccaaa |
27876972 |
T |
|
| Q |
182 |
caaacttatcattttttgctaatgatacaacctaactctcaaa-gtcttctttttcacttaataactagttttgaatggcttgtaagtcttgagatccaa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27876971 |
caaacttatcattttttgctaatgatacaacctaactctcaaaagtcttctttttcacttaataactagttttgaatggcttgtaagtcttgagatccaa |
27876872 |
T |
|
| Q |
281 |
aaccactccagcaatggatccaacagcagctaaaattgaaatgatgaggcaacatccactaagcatctgaagtgcaagccactttttagtccatcttcca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27876871 |
aaccactccagcaatggatccaacagcagctaaaattgaaatgatgaggcaacatccactaagcatctgaagtgcaagccactttttagtccatcttcca |
27876772 |
T |
|
| Q |
381 |
atcttcttttgtgaaatatacatgtctattgggtaataaactgttaaaggccaaaacccaaaagctccaagtattccaacaacatcattgaaaaatggta |
480 |
Q |
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| T |
27876771 |
atcttcttttgtgaaatatacatgtctattgggtaataaactgttaaaggccaaaacccaaaagctccaagtattccaacaacatcattgaaaaatggta |
27876672 |
T |
|
| Q |
481 |
atagcatggctacgattgttgtcaatag |
508 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
27876671 |
atagcatggctatgattgttgtcaatag |
27876644 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 44314686 - 44314743
Alignment:
| Q |
415 |
aataaactgttaaaggccaaaacccaaaagctccaagtattccaacaacatcattgaa |
472 |
Q |
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|||| |||||||||||||||||||| | |||||||||| ||| | |||||||||||| |
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| T |
44314686 |
aatagactgttaaaggccaaaaccctactgctccaagtaatcccaaaacatcattgaa |
44314743 |
T |
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