View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_46 (Length: 522)
Name: NF8986_low_46
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 8950817 - 8951119
Alignment:
| Q |
23 |
aaattatgtgttcctttcccaagagatcttcaaattacacttcataaaagttaatttgtattacactttaatccattatgatcatnnnnnnn-tgtgggt |
121 |
Q |
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| T |
8950817 |
aaattatgtgttccttccccaagagatcttcaaattacacttcataaaagttaatttgtattacactttaatccattatgatcataaaaaaaatgtgggt |
8950916 |
T |
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| Q |
122 |
atcttggctccctcatattatttgtgaacttatagaccgaacaactcggaacttcgaaaggaaaatctctgataacaaaggtcttaacttggtgagttgg |
221 |
Q |
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| T |
8950917 |
agattggctccctcatattatttgtgaacttatagaccgaacaactcggaacttcgaaaggaaaatctctaatagcacgggtcttaacttggtgagttgg |
8951016 |
T |
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| Q |
222 |
gtaaaaattgttggacccaaaatttggg--gtggtctaggaattcacatgatatgagatgataagacttctcttgtgggaaagcatgtttgggacatgct |
319 |
Q |
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| T |
8951017 |
gtaaaaattgttagacccaaaatttggggtgtggtctagaaattcagatgacatgagatgataagacttctcttgtgggaaagcatgtttgggacatgct |
8951116 |
T |
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| Q |
320 |
tca |
322 |
Q |
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| T |
8951117 |
tca |
8951119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 320 - 505
Target Start/End: Original strand, 8951186 - 8951371
Alignment:
| Q |
320 |
tcatgccaacaccaaaactttgggttttatcattaaagccaaaaacatccttaaagatggcttcactcggtaaggaagctctagaaactcttccttctgg |
419 |
Q |
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| T |
8951186 |
tcatgccaacaccaaaactttgggttttatcattaaagccaaaaacatccttaaagatggcttcactcggtaaggaagctctagaaactcttccttctgg |
8951285 |
T |
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| Q |
420 |
tatagtcacttgacttccttcggccctttatgtactaatgttccttatgtgcacatcaaccaccttgctttgagaattattgatgt |
505 |
Q |
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| T |
8951286 |
tatagtcacttgacttccttcggccctttatgtactaatgttccttatgtgcacatcaacgaccttgctttgagaattattgatgt |
8951371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 14807319 - 14807277
Alignment:
| Q |
201 |
ggtcttaacttggtgagttgggtaaaaattgttggacccaaaa |
243 |
Q |
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| T |
14807319 |
ggtcttaacttggtgagttgggaaaaaattgctagacccaaaa |
14807277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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