View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_48 (Length: 519)

Name: NF8986_low_48
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_48
NF8986_low_48
[»] chr3 (5 HSPs)
chr3 (12-503)||(21705988-21706478)
chr3 (12-217)||(21712986-21713191)
chr3 (294-503)||(21713334-21713543)
chr3 (14-166)||(21709236-21709388)
chr3 (293-349)||(21709088-21709144)


Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 503
Target Start/End: Complemental strand, 21706478 - 21705988
Alignment:
Q  12 atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||   |||||||||||||||||||||||    
T  21706478 atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagac 21706379  T
Q  112 tcggagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706378 tctgagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa 21706279  T
Q  212 atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcaatttgactatgatcagagcgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21706278 atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgt 21706179  T
Q  312 atcatcacagcgatccatgacaaagccaatttaggacaatcgctcacaagaagatcctttaaagagtgagatggccactttgcatgacagtattcgggac 411  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  21706178 atcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctttaaagagtgagatggccactttgcaagacagtattcgggac 21706079  T
Q  412 atatcccaataaaattgtgaaggaaatggagtttgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaagaatgatgt 503  Q
    |||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706078 atatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgagaagaatgatgt 21705988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 21712986 - 21713191
Alignment:
Q  12 atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagac 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||  |   ||  |||||| || ||||||||||||||    
T  21712986 atggacatcaactctggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagac 21713085  T
Q  112 tcggagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa 211  Q
    ||    |||||||||||| ||||||| ||  |||||||||||| ||||||||||||||| ||| ||| | ||| |||||||||| ||||||||||||||     
T  21713086 tccatatctgtcttggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaac 21713185  T
Q  212 atgaaa 217  Q
    ||||||    
T  21713186 atgaaa 21713191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 294 - 503
Target Start/End: Original strand, 21713334 - 21713543
Alignment:
Q  294 tgactatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggacaatcgctcacaagaagatcctttaaagagtgagatggccactttg 393  Q
    ||||||||| |||| || ||||| | ||||||||| |||| | ||||||| ||||||||   ||||| ||||||| | |||||||||||||||||||| |    
T  21713334 tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcg 21713433  T
Q  394 catgacagtattcgggacatatcccaataaaattgtgaaggaaatggagtttgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgaga 493  Q
    ||||||||||||| ||||| |||||||| | ||||| |||  ||  ||||||||| |||| |||||||| ||||||| |||||||  |||||| ||||||    
T  21713434 catgacagtattcaggacacatcccaatgagattgtcaagagaactgagtttgagaacttccagttgagaaagcatggtgtggttcaggtattggtgaga 21713533  T
Q  494 agaatgatgt 503  Q
     |||||||||    
T  21713534 tgaatgatgt 21713543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 21709388 - 21709236
Alignment:
Q  14 ggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgagaaacacttaaatgcttgagacattggagactc 113  Q
    ||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||||||  |  |||| || || ||| ||||||||||||||||    
T  21709388 ggacatcaactttagtagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactc 21709289  T
Q  114 ggagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgagg 166  Q
     || | |||||||||||| || |||||||||||||||||| |||||| |||||    
T  21709288 cgaatttgtcttggagttataagacccaaccatgatatggcgttcaattgagg 21709236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
Q  293 ttgactatgatcagagcgtatcatcacagcgatccatgacaaagccaatttaggaca 349  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||||    
T  21709144 ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca 21709088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University