View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_50 (Length: 503)

Name: NF8986_low_50
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_50
NF8986_low_50
[»] chr1 (26 HSPs)
chr1 (18-491)||(9069390-9069863)
chr1 (22-491)||(9085693-9086159)
chr1 (42-491)||(9124885-9125331)
chr1 (49-491)||(8861317-8861753)
chr1 (250-491)||(8978912-8979153)
chr1 (48-287)||(9105983-9106226)
chr1 (48-211)||(9097833-9097994)
chr1 (255-377)||(8927220-8927342)
chr1 (255-389)||(8962561-8962695)
chr1 (255-491)||(9364552-9364788)
chr1 (28-147)||(8978717-8978836)
chr1 (255-377)||(8939646-8939768)
chr1 (255-392)||(9337792-9337929)
chr1 (97-144)||(8962809-8962856)
chr1 (255-374)||(9300366-9300485)
chr1 (57-151)||(9235926-9236020)
chr1 (255-401)||(9242256-9242402)
chr1 (255-396)||(9236124-9236265)
chr1 (97-144)||(8927459-8927506)
chr1 (97-144)||(8939882-8939929)
chr1 (320-491)||(9106248-9106417)
chr1 (255-359)||(9466450-9466554)
chr1 (255-446)||(9377918-9378109)
chr1 (70-144)||(9300602-9300676)
chr1 (57-151)||(9378213-9378307)
chr1 (57-125)||(9466249-9466317)
[»] scaffold0690 (1 HSPs)
scaffold0690 (255-380)||(1872-1997)
[»] chr6 (1 HSPs)
chr6 (255-380)||(15910109-15910234)
[»] chr3 (1 HSPs)
chr3 (255-374)||(9171775-9171894)
[»] chr7 (2 HSPs)
chr7 (255-323)||(31532414-31532482)
chr7 (255-323)||(31541037-31541105)


Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 9069390 - 9069863
Alignment:
Q  18 aggcggaaatgttaattggctgtcatcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9069390 aggcggaaatgttaattggctgtcatcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggctgccactgaatacaccaaagt 9069489  T
Q  118 ccgacaattgcaagtttctttgcaattttaacattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggt 217  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069490 ccgacaattgcaagtttccttgcaattttagcattgccaacttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggt 9069589  T
Q  218 ataaaacatgcaaatcttctgcagatgacgaatctacattctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  9069590 ataaaacatgcaaatcttctgcagatgacgaatctacattctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaag 9069689  T
Q  318 agaaacatttccaaaatttcgagacacaacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacat 417  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069690 agaaacatttccaaaatttcgagacactacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacat 9069789  T
Q  418 aatttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069790 aatttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 9069863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 491
Target Start/End: Original strand, 9085693 - 9086159
Alignment:
Q  22 ggaaatgttaattggctgtcatcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccga 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  9085693 ggaaaagttaattggctgtcatcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggctgccactgaatgcaccaaagtccga 9085792  T
Q  122 caattgcaagtttctttgcaattttaacattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggtataa 221  Q
    ||||||| |||||||||||||  ||  |||   || |||| ||||||| ||| |||| |||||||||||||||||| |||| |||||||||  |||||||    
T  9085793 caattgcgagtttctttgcaaacttcgcat---caccttcgtcttcaatattcatatatatgtctccttccaataaattataaatccattctcggtataa 9085889  T
Q  222 aacatgcaaatcttctgcagatgacgaatctacattctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaa 321  Q
    |  ||| |||  |||||||||||| || ||||||||||| ||||| |||||||| |||||||||||||| ||| |||  || ||||||||||||||||||    
T  9085890 actatggaaagtttctgcagatgatgagtctacattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaa 9085989  T
Q  322 acatttccaaaatttcgagacacaacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatt 421  Q
    ||||| ||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  9085990 acattcccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcccctagcagctgtcatggacactacactaatattcttggaacataatt 9086089  T
Q  422 tggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||| |||||||||| ||||||| |||||    
T  9086090 tggcgagtccaaagtctgaaatttttggagtgaaggtttcatctagcaaaacattgtgagggttaatgtc 9086159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 42 - 491
Target Start/End: Original strand, 9124885 - 9125331
Alignment:
Q  42 atcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattgcaagtttctttgca 141  Q
    |||| |||| |||||||||||||| || | ||| ||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  9124885 atctgctgtctccaacatttgtatcacagcttttatggagggacgatttattggctgccattgaatacaccaaagtccaacaattgcgagtttctttgca 9124984  T
Q  142 attttaacattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggtataaaacatgcaaatcttctgcag 241  Q
    ||||||| ||   || | |||||||||| |||||||||| | ||||||||||||| ||||||||||||||| || ||||||||||| |||| |||  |||    
T  9124985 attttaatat---catcctcatcttcaatatttatatgtgtatctccttccaataggttatgaatccattctggatataaaacatggaaattttcatcag 9125081  T
Q  242 atgacgaatctacattctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgaga 341  Q
    |  | |||||||||||||| | ||||||||||| ||| ||||||||||| ||| |||  || |||||||||||| |||||||||||||||||||||| ||    
T  9125082 acaaggaatctacattcttgcgtcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtga 9125181  T
Q  342 cacaacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatttggcgagcccaaagtcagaa 441  Q
    || |||||| ||||||||||||||||||||||| ||||| || |||||||| || | ||||| |||||| | ||||||||||||||| |||||||| |||    
T  9125182 caaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatggatacaacactaacattctttgaacataatttggcgagtccaaagtctgaa 9125281  T
Q  442 atttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    ||||||||||||||||  ||||||| |||||||||| |||||||||||||    
T  9125282 atttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtc 9125331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 49 - 491
Target Start/End: Original strand, 8861317 - 8861753
Alignment:
Q  49 gtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattgcaagtttctttgcaattttaa 148  Q
    |||||||||||||| |  ||  |||| || || |||||||| || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8861317 gtttccaacatttgcacaacattttttattgatggacgatttatcggttgccattgaatgcaccaaagtccaacaattgcaagtttctttgcaattttaa 8861416  T
Q  149 cattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccattccgggtataaaacatgcaaatcttctgcagatgacga 248  Q
     ||  ||   |||||| |||| ||  |||  ||| |||||||||||||||||||| |||||||| |||||||  ||||| |||  |||||||||   ||     
T  8861417 gatctcc---ttcatcctcaatatggatacttatatctccttccaataagttatggatccattctgggtatagcacatgaaaagtttctgcaga---cgt 8861510  T
Q  249 atctacattctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaact 348  Q
     |||||||||||||| |||||||||||||||||||||||||||||  ||| ||| ||||| ||||||||||| ||||| ||||||||||  || | ||||    
T  8861511 gtctacattctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaact 8861610  T
Q  349 tcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatttggcgagcccaaagtcagaaatttttg 448  Q
    || || ||||| ||||||||||||||| ||||||||||||||||||| |  ||||||||||||| ||||||||||||||| ||||| || ||||||||||    
T  8861611 tcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacgctaagattcttggaacataatttggcgagaccaaaatccgaaatttttg 8861710  T
Q  449 gagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    | || ||||| ||||||| |||||||||| |||||||||||||    
T  8861711 gcgtaaaggattcatctagcaaaacattgtgagggttgatgtc 8861753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 250 - 491
Target Start/End: Original strand, 8978912 - 8979153
Alignment:
Q  250 tctacattctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaactt 349  Q
    |||| |||||| |||||| |||||||||||||||||||||||||| | |  || |||||||| |||||||| ||||| ||||||||||  |||| |||||    
T  8978912 tctatattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaactt 8979011  T
Q  350 cgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatttggcgagcccaaagtcagaaatttttgg 449  Q
    | |||||||||||||||||||| |||||||| |||||||||||||||| ||||  |||| ||| ||||||||||||||| ||||| || |||||||||||    
T  8979012 caggtgccatatatcccaaggtacccctagccgctgtcatggacactacactacaattcatggaacataatttggcgagaccaaaatctgaaatttttgg 8979111  T
Q  450 agtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    ||| || |  ||||| | |||||||||| |||||||||||||    
T  8979112 agttaatgtgtcatcgagcaaaacattgtgagggttgatgtc 8979153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 48 - 287
Target Start/End: Original strand, 9105983 - 9106226
Alignment:
Q  48 tgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgcc---actgaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||   | ||||| ||||||||| ||  |||||  |||||||||| || |    
T  9105983 tgtttccaacatttgtatgacagtttttatggaaggaagattcattggttgccattattgaatgcaccaaagttcgggaattgtgagtttctttgaaaat 9106082  T
Q  145 ttaacattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatcc----attccgggtataaaacatgcaaatcttctgca 240  Q
    |||||||   || ||||| |||||| |||||||| || ||||| ||||||||||||||||||||    ||||  ||||||||||||| | || ||  |      
T  9106083 ttaacat---caccttcaccttcaatatttatatatacgtctctttccaataagttatgaatccatatattctcggtataaaacatgaagatttttcgtg 9106179  T
Q  241 gatgacgaatctacattctttcttcctccaaccatttctagcaacaa 287  Q
    |||| ||||||||||||| ||| | ||||||||||||||||||||||    
T  9106180 gatggcgaatctacattccttccttctccaaccatttctagcaacaa 9106226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 211
Target Start/End: Original strand, 9097833 - 9097994
Alignment:
Q  48 tgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccact---gaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    |||||||||||||| | |||| ||||  ||||||||| |||||||||||||||| |   |||| ||||||||| || ||||||||||||||||||| | |    
T  9097833 tgtttccaacatttctgtgacagttt--atggaaggaagattcattggttgccattattgaatgcaccaaagttcggcaattgcaagtttctttgccagt 9097930  T
Q  145 ttaacattgccagcttcatcttcaacatttatatgtatgtctccttccaataagttatgaatccatt 211  Q
    |||||||   || ||||  |||||| |||||||| ||||||||||||||||||| | ||||||||||    
T  9097931 ttaacat---caccttccccttcaatatttatatatatgtctccttccaataaggtttgaatccatt 9097994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 8927342 - 8927220
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||||||||| |||||||||||||| ||  | | ||||||||||||||||  ||| ||||| ||||| |||||||| | |||||| |||    
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  355 gccatatatcccaaggttcccct 377  Q
    ||||| || || || ||||||||    
T  8927242 gccatgtaacctaatgttcccct 8927220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 389
Target Start/End: Complemental strand, 8962695 - 8962561
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||| ||||| || |||| |||||||||| | | |||||||||||| |||  ||| ||||| ||||| |||||||| |  ||||| |||    
T  8962695 attctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggt 8962596  T
Q  355 gccatatatcccaaggttcccctagcagctgtcat 389  Q
    ||||| ||||| || ||||||||||| || |||||    
T  8962595 gccatgtatcctaatgttcccctagccgcagtcat 8962561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 491
Target Start/End: Complemental strand, 9364788 - 9364552
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    |||||||||||||||||||||||| | ||| ||||| ||  ||| ||||||||||||||||  ||| ||||| ||||| ||||  || | |||||| |||    
T  9364788 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9364689  T
Q  355 gccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatttggcgagcccaaagtcagaaatttttggagtga 454  Q
    ||||| || || || |||||| |||| || |||||||| || |||||  |||| || | |||||  ||||| |  ||||| || | |||||| |||||||    
T  9364688 gccatgtagcctaatgttcccttagctgcagtcatggatacgatactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagtga 9364589  T
Q  455 aggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    |    ||||||||||| |||||  |||| ||||||||    
T  9364588 aattgtcatctaacaagacattatgaggattgatgtc 9364552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 8978717 - 8978836
Alignment:
Q  28 gttaattggctgtcatcttctgtttccaacatttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattg 127  Q
    ||||||||| |||| ||| | || ||||||||||| ||||| | ||| ||||| ||||||||    || ||||||||||| ||||||||||| |||||||    
T  8978717 gttaattggttgtcttctccagtctccaacatttggatgacagatttgatggatggacgatttccggggtgccactgaatgcaccaaagtccaacaattg 8978816  T
Q  128 caagtttctttgcaatttta 147  Q
    ||||||| || |||||||||    
T  8978817 caagttttttggcaatttta 8978836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 8939768 - 8939646
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||||||||| || |||| |||||| ||  | | ||||||||||||||||  ||| ||||| ||||| |||||||| | |||||| |||    
T  8939768 attctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8939669  T
Q  355 gccatatatcccaaggttcccct 377  Q
    ||||| || || || ||||||||    
T  8939668 gccatgtaccctaaagttcccct 8939646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 392
Target Start/End: Complemental strand, 9337929 - 9337792
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    |||||||||||||||||||||||| | ||| ||||| ||  ||| ||||||||||||||||  ||| ||||| ||||| ||||  || | |||||| |||    
T  9337929 attctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggt 9337830  T
Q  355 gccatatatcccaaggttcccctagcagctgtcatgga 392  Q
    ||||| || || || |||||| |||| || ||||||||    
T  9337829 gccatgtagcctaatgttcccttagctgcagtcatgga 9337792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 8962856 - 8962809
Alignment:
Q  97 tgccactgaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  8962856 tgccactgaatgcaccaaagtccgacaattgctagtttctttgcaatt 8962809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 9300485 - 9300366
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    |||||| ||||| |||||||| || ||||||||||| ||| |||  |||||||| ||||||  ||| ||||| ||||| |||| ||| | ||||||||||    
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  355 gccatatatcccaaggttcc 374  Q
    ||||| ||||| || |||||    
T  9300385 gccatgtatcctaatgttcc 9300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 9235926 - 9236020
Alignment:
Q  57 catttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattgcaagtttctttgcaattttaacat 151  Q
    ||||||||  |||||||| ||||| || |||| ||  || | |||||||||||||||||||||||| |  |||||||||||||||||| ||||||    
T  9235926 catttgtaccacggttttcatggatggccgatccaccggattccactgaatacaccaaagtccgaccagcgcaagtttctttgcaattctaacat 9236020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 401
Target Start/End: Original strand, 9242256 - 9242402
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||||||||| || | ||| ||||| ||  ||| ||||| ||| ||||||  ||| |||||||||||||||| ||| | |||||| |||    
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  355 gccatatatcccaaggttcccctagcagctgtcatggacactatact 401  Q
    ||||| || || |  |||||| |||| || |||||||| || |||||    
T  9242356 gccatgtagcctactgttcccttagccgcagtcatggatacaatact 9242402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 9236124 - 9236265
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    |||||||||||| |||||||| || ||||||||||| ||  | |  || ||||||||||||  |||||||||||| || ||||  || | |||||| |||    
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  355 gccatatatcccaaggttcccctagcagctgtcatggacact 396  Q
    || || |||||||||||||| || || || ||||| ||||||    
T  9236224 gcaatgtatcccaaggttcctctcgctgcagtcatagacact 9236265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 8927506 - 8927459
Alignment:
Q  97 tgccactgaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  8927506 tgccactgaatgcaccaaagtccgacaattgctagtttttttgcaatt 8927459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 8939929 - 8939882
Alignment:
Q  97 tgccactgaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||    
T  8939929 tgccactgaatgcaccaaagtccgacaatcgctagtttctttgcaatt 8939882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 491
Target Start/End: Original strand, 9106248 - 9106417
Alignment:
Q  320 aaacatttccaaaatttcgagacacaacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataa 419  Q
    ||||||||||||||||| | ||||  ||||| || |||||||||||||||||| | |||||| | || |||||||| | || | | || || | ||| ||    
T  9106248 aaacatttccaaaattttgtgaca--acttctggcgccatatatcccaaggtttctctagcatcggtaatggacaccaaacaatggttattagaacaaaa 9106345  T
Q  420 tttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtc 491  Q
    |||||| |  ||||| || |||| |||||| |||||    ||||||  |||||||||| |||||||||||||    
T  9106346 tttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtc 9106417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 9466450 - 9466554
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||| ||||||| || | ||||||||| ||| |||  |||||||||||||||   || ||||| || || |||| ||| | ||||||||||    
T  9466450 attctttcttcctgcaaccatctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggt 9466549  T
Q  355 gccat 359  Q
    |||||    
T  9466550 gccat 9466554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 446
Target Start/End: Complemental strand, 9378109 - 9377918
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||| ||||||||||| ||||||||||| |||||  | |  || |||||||||||   |||||||||||| || ||||  || | |||||| |||    
T  9378109 attctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggt 9378010  T
Q  355 gccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataatttggcgagcccaaagtcagaaatttt 446  Q
    || || || ||||| ||||| ||||| || || || |||||  ||||  |||| |||| ||| | ||| || || |||||||||| ||||||    
T  9378009 gcaatgtagcccaatgttcctctagctgcggttatagacaccgtactttgatttttgggacacagtttagcaagtccaaagtcagtaatttt 9377918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 9300676 - 9300602
Alignment:
Q  70 gttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattgcaagtttctttgcaatt 144  Q
    ||||| ||||| ||||||| ||| |||||||||||||| ||||| | ||| |||||||| | ||| |||||||||    
T  9300676 gttttcatggacggacgatgcataggttgccactgaatgcaccataatcccacaattgccattttttttgcaatt 9300602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 9378307 - 9378213
Alignment:
Q  57 catttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaattgcaagtttctttgcaattttaacat 151  Q
    ||||||||  |||||||| ||||| || |||| ||  || | ||| |||||||||||||||||||| |  |||||||||||||| ||| ||||||    
T  9378307 catttgtaccacggttttcatggatggccgatccaccggattccattgaatacaccaaagtccgaccagcgcaagtttctttgcgattctaacat 9378213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 9466249 - 9466317
Alignment:
Q  57 catttgtatgacggttttaatggaaggacgattcattggttgccactgaatacaccaaagtccgacaat 125  Q
    ||||||||| || ||||| ||||| ||||||| ||| ||||||||||| || |||| |||||| |||||    
T  9466249 catttgtatcacagttttcatggatggacgatgcataggttgccactggatgcaccgaagtccaacaat 9466317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 1997 - 1872
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||||||||| || | ||| ||||| ||  ||| ||||||||| ||||||  ||| |||||||||||||||| ||| | |||||| |||    
T  1997 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 1898  T
Q  355 gccatatatcccaaggttcccctagc 380  Q
    ||||| || || || |||||| ||||    
T  1897 gccatgtagcctaatgttcccttagc 1872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 15910109 - 15910234
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    ||||||||||||||||||||| || | ||| ||||| ||  ||| ||||||||| ||||||  ||| |||||||||||||||| ||| | |||||| |||    
T  15910109 attctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 15910208  T
Q  355 gccatatatcccaaggttcccctagc 380  Q
    ||||| || || || |||||| ||||    
T  15910209 gccatgtagcctaatgttcccttagc 15910234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 9171894 - 9171775
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaacatttccaaaatttcgagacacaacttcgggt 354  Q
    |||||||||||||||||| ||||| |  | |||||| ||| | |  |||||||||||||||  ||| ||||| |||||||||| ||| | ||||||||||    
T  9171894 attctttcttcctccaacaatttccaatagcaacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggt 9171795  T
Q  355 gccatatatcccaaggttcc 374  Q
    ||||| ||||| || |||||    
T  9171794 gccatgtatcctaatgttcc 9171775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 31532414 - 31532482
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaac 323  Q
    ||||||||||||||||| ||||||||| |  ||||| ||| ||| ||||| |||||||||  |||||||    
T  31532414 attctttcttcctccaatcatttctagaattaacatcccataactgtatacatcagacttgtgagaaac 31532482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 31541037 - 31541105
Alignment:
Q  255 attctttcttcctccaaccatttctagcaacaacattccagaacggtatatatcagacttaagagaaac 323  Q
    |||||||||||| |||||||||||||| |  ||||| ||| |||  |||| |||||||||| |||||||    
T  31541037 attctttcttcccccaaccatttctagaattaacataccataactatatacatcagacttatgagaaac 31541105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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