View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_52 (Length: 499)
Name: NF8986_low_52
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 41651329 - 41651758
Alignment:
| Q |
18 |
gttaacggaggtaaagcttcttagctatccatgtatcggcacattataatcataggaatgtcacgctagaattatcactgaaccaactttggtgaaggag |
117 |
Q |
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| T |
41651329 |
gttaacggaggtaaagcttcttagctatccatg-atcggcacattataatcataggaatgtcacgttagaattatcactgaaccaactttggtgaaggag |
41651427 |
T |
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| Q |
118 |
gaacgatcttgttttcaacaacatttgagtcgagagatctgtcacagttggagtaatacatagattagttgttggtgtgaaccatagctgtgtatatgca |
217 |
Q |
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| T |
41651428 |
gaacgatcttgttttcaacaacatttgagtcgagagatctgtcacagttggagtaatacatagattagttgttggtgtgaaccatagctgtgtatatgca |
41651527 |
T |
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| Q |
218 |
agtcttgcatcctaaagagcattcaagaaatatccacctttcttgctacaatgtttttctgaagtgtgccgtttgtcttgcgggaggatgagcactggta |
317 |
Q |
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| T |
41651528 |
agtcttgcatcctaaagagcattcaagaaatatccacctttcttgctacaatgtttttctgaagtgtgtcgtttgtctcgcgggaggatgagcactggta |
41651627 |
T |
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| Q |
318 |
tcatgtttttggtgaaaacaatggaggtcttgttttggaagagagtttcacatgctttggtgtagcccggaagttttgaattttagagttttcacatgct |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41651628 |
tcatgtttttggtgaaaacaatggaggt-ttgttttggaagagagtttcacatgctttggtgtagccctgaagttttgaattttagagttttcacatgct |
41651726 |
T |
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| Q |
418 |
ttgtgtttttctagggctttccgctcttcatc |
449 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41651727 |
ttgtgtttttctagggctttccgctcttcatc |
41651758 |
T |
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