View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_53 (Length: 488)
Name: NF8986_low_53
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Complemental strand, 15932660 - 15932199
Alignment:
| Q |
19 |
agaacatagatgagtttgttttgagattcttggattccaatgatagtgtagcataaaaataaagggcagtttttccctcttttgtatagctgaccgtgat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
15932660 |
agaacatagatgagtttgttttgagattcttggattccaatgatagtgtagcataaaaataaagagcagtttttccctcttttgtatagctgaccatgat |
15932561 |
T |
|
| Q |
119 |
ttctcctactgggttctgatgttattgtttaacacaataaaaatgatatttttccctatttttgtttaacttattttgtttataagccaaaataatgata |
218 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932560 |
ttctcccactggattctgatgttattgtttaacacaataaaaatgatacttttccctatttttgtttaacttattttgtttataagccaaaataatgata |
15932461 |
T |
|
| Q |
219 |
tttggatgaattcttatcggcactttgctgtgtcttgtcctaccgagttgtttcattgtttattcccttactccaaagtgagata-ttttgcaggttgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15932460 |
tttggatgaattcttatcggcactttgctgtgtcttgtcctaccgagttgtttcattgtttattcccttactccaaagtgagatatttttgcaggttgtt |
15932361 |
T |
|
| Q |
318 |
tacgatgccaaacaactatctagtctagttactaagaagaagaaaaaacataattggcttaactactatcaacttatatgttgatgttatgcttcatttt |
417 |
Q |
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|||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
15932360 |
tacgatgcaaagcaactatctagtccagttactaagaagaagaaaaaacataattggcttaactactatcaacttagatgttaatgttatgcttcatttt |
15932261 |
T |
|
| Q |
418 |
tatttcacaaacatcgttaactattttatataaggtttctttcctaggattgatttgatgat |
479 |
Q |
| |
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||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
15932260 |
tatttcacaaagatggttaactattttatgtaaggtttctttcctgggattgatttgatgat |
15932199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 43386263 - 43386065
Alignment:
| Q |
34 |
ttgttttgagattcttggattccaatgatagtgtagcataaaaataaagggcagtttttccctcttttgtatagctgaccgtgatttctcctactgggtt |
133 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| | | ||||||| ||| ||| || |
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|
| T |
43386263 |
ttgttttgagattcttgtattccaatggtagtgtagcatcaaaataaagggtagtttttccctcttttgtatagatacctatgatttcgactattggatt |
43386164 |
T |
|
| Q |
134 |
ctgatgttattgtttaacacaataaaaatgatatttttccctatttttgttta-acttattttgtttataagcc-aaaataatgatatttggatgaatt |
230 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
43386163 |
ctgatgttattgtttaacacaataaaaatgatagttttccctatttctgtttagtttttttttgtttataagccaaaaataatgatattgggatgaatt |
43386065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 206 - 393
Target Start/End: Original strand, 37420036 - 37420221
Alignment:
| Q |
206 |
caaaataatgatatttggatgaattcttatcggcactttgctgtgtcttgtcctaccgagttgtttcattgtttattcccttactccaaagtgagatatt |
305 |
Q |
| |
|
|||||||| |||| | |||||||||||||| |||| |||| |||||||| ||||||| |||||||||||||| | ||||||||||| || |||| || || |
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| T |
37420036 |
caaaataacgatactgggatgaattcttattggcagtttgttgtgtcttatcctaccaagttgtttcattgtgttttcccttactctaa-gtgatat-tt |
37420133 |
T |
|
| Q |
306 |
ttgcaggttgtttacgatgccaaacaactatctagtctagttactaagaagaagaaaaaacataattggcttaactactatcaactta |
393 |
Q |
| |
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|||||||||||||||||||| || |||| |||||||||||| |||||||||||||| |||| ||||||||| |||||||| |||||| |
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|
| T |
37420134 |
ttgcaggttgtttacgatgcaaagaaactctctagtctagttgctaagaagaagaaacaacagaattggcttgactactatgaactta |
37420221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 39943404 - 39943600
Alignment:
| Q |
34 |
ttgttttgagattcttggattccaatgatagtgtagcataaaaataaagggcagtttttccctcttttgtatagctgaccgtgatttctcctactgggtt |
133 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| | || || ||| ||| ||| || |
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| T |
39943404 |
ttgttttgagattcttgtattccaatggtagtgtagcatcaaaataaagggtaatttttccctcttttgtatagatacccatgtttttgactattggatt |
39943503 |
T |
|
| Q |
134 |
ctgatgttattgtttaacacaataaaaatgatatttttccctatttttgtttaacttattttgtttataagcc-aaaataatgatatttggatgaatt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
39943504 |
ctgatgttattgtttaacacaataaaaat-atacttttccctatttttgtttagctttttttgtttataagccaaaaataatgatattgggatgaatt |
39943600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 7539362 - 7539554
Alignment:
| Q |
34 |
ttgttttgagattcttggattccaatgatagtgtagcataaaaataaagggcagtttttccctcttttgtatagctgaccgtgatttctcctactgggtt |
133 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||| || || ||||||| ||| ||| || |
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| T |
7539362 |
ttgttttgagattcttgtattctaatggtagtgtagcatcaaaataaagggtagtttttccctcttttgtatagatgcccatgatttcgactattggatt |
7539461 |
T |
|
| Q |
134 |
ctgatgttattgtttaacacaataaaaatgatatttttccctatttttgtttaacttattttgtttataagcc-aaaataatgatatttggatgaatt |
230 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
7539462 |
atgatgttattgtttaacacaataaaa-----acttttccctatttttgtttagctttttttgtttataagccaaaaataatgatattgggatgaatt |
7539554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 23224322 - 23224363
Alignment:
| Q |
28 |
atgagtttgttttgagattcttggattccaatgatagtgtag |
69 |
Q |
| |
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||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
23224322 |
atgagcttgatttgagattcttggattccaatggtagtgtag |
23224363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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