View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_56 (Length: 461)
Name: NF8986_low_56
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Complemental strand, 4287148 - 4286711
Alignment:
| Q |
6 |
ttttaatttttgctctgatatctattagttattgttgatttgaaatatgtcatgcatcttgatgctctaatgatcaaatctatcactctgacctggatga |
105 |
Q |
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| T |
4287148 |
tttttatttttgctctgatatctattagttagtgttgatttgaaatatgtcat----cttgatgctctaatgatcaaatctatcactctgaactggatga |
4287053 |
T |
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| Q |
106 |
cataaattggtttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttca |
205 |
Q |
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| T |
4287052 |
cataaattggtttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttca |
4286953 |
T |
|
| Q |
206 |
tgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttga |
305 |
Q |
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| T |
4286952 |
tgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttga |
4286853 |
T |
|
| Q |
306 |
ctaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagt |
405 |
Q |
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| T |
4286852 |
ctaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagt |
4286753 |
T |
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| Q |
406 |
gctagtttattgcatgtagtcaaatttatgattttttgatgt |
447 |
Q |
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| T |
4286752 |
gctagtttattgcatgtagtcaaatttatgatttttttatgt |
4286711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
240 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
294 |
Q |
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| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
193 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
254 |
Q |
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| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
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