View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_58 (Length: 445)

Name: NF8986_low_58
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_58
NF8986_low_58
[»] chr8 (21 HSPs)
chr8 (21-228)||(15596119-15596325)
chr8 (252-342)||(15596658-15596748)
chr8 (340-445)||(9935349-9935458)
chr8 (342-445)||(32897083-32897190)
chr8 (343-445)||(32890959-32891065)
chr8 (342-445)||(14799398-14799505)
chr8 (343-445)||(7771302-7771408)
chr8 (346-445)||(42992989-42993093)
chr8 (343-445)||(1882734-1882841)
chr8 (341-445)||(5542141-5542249)
chr8 (343-445)||(14418011-14418114)
chr8 (343-438)||(39727300-39727402)
chr8 (343-445)||(36819041-36819147)
chr8 (343-445)||(24250173-24250278)
chr8 (343-438)||(10705920-10706020)
chr8 (348-424)||(1171414-1171493)
chr8 (365-438)||(39735558-39735634)
chr8 (227-267)||(15596600-15596640)
chr8 (343-398)||(39689782-39689838)
chr8 (350-445)||(22219706-22219806)
chr8 (343-395)||(10700132-10700186)
[»] chr6 (17 HSPs)
chr6 (341-445)||(32035267-32035375)
chr6 (343-445)||(4580304-4580410)
chr6 (343-445)||(8650786-8650892)
chr6 (343-445)||(8662764-8662870)
chr6 (343-445)||(21190849-21190955)
chr6 (343-445)||(21782736-21782842)
chr6 (342-445)||(31756195-31756304)
chr6 (343-445)||(21197004-21197110)
chr6 (343-445)||(18778653-18778760)
chr6 (343-445)||(25354281-25354388)
chr6 (348-436)||(17581705-17581797)
chr6 (343-432)||(6098060-6098158)
chr6 (344-445)||(6102693-6102803)
chr6 (349-445)||(21770546-21770647)
chr6 (403-445)||(25343694-25343736)
chr6 (364-445)||(34603336-34603419)
chr6 (364-445)||(34724613-34724696)
[»] chr2 (14 HSPs)
chr2 (343-445)||(28682928-28683034)
chr2 (343-445)||(36750485-36750591)
chr2 (348-445)||(35090637-35090738)
chr2 (342-445)||(35438692-35438798)
chr2 (349-445)||(35084665-35084765)
chr2 (343-445)||(13456170-13456276)
chr2 (343-445)||(13462111-13462217)
chr2 (348-445)||(13149674-13149775)
chr2 (342-445)||(31008425-31008533)
chr2 (343-445)||(30965398-30965505)
chr2 (343-445)||(31002447-31002554)
chr2 (343-438)||(11048536-11048635)
chr2 (343-445)||(44716787-44716894)
chr2 (343-438)||(23343638-23343737)
[»] chr5 (17 HSPs)
chr5 (342-445)||(28525368-28525475)
chr5 (343-445)||(28531465-28531571)
chr5 (343-445)||(7389531-7389637)
chr5 (342-445)||(12686161-12686268)
chr5 (343-445)||(12692264-12692370)
chr5 (343-445)||(30384359-30384467)
chr5 (352-445)||(24054405-24054502)
chr5 (343-445)||(41297347-41297453)
chr5 (343-438)||(32096943-32097043)
chr5 (342-438)||(16215156-16215256)
chr5 (349-444)||(14610220-14610321)
chr5 (338-438)||(32094137-32094242)
chr5 (365-438)||(26509927-26510000)
chr5 (344-445)||(19066091-19066196)
chr5 (343-445)||(30772353-30772460)
chr5 (349-404)||(8706454-8706510)
chr5 (343-445)||(19059747-19059853)
[»] chr7 (15 HSPs)
chr7 (343-445)||(3817294-3817400)
chr7 (342-445)||(3811151-3811258)
chr7 (343-445)||(339441-339547)
chr7 (343-445)||(351856-351962)
chr7 (343-445)||(42767277-42767384)
chr7 (343-445)||(12804070-12804176)
chr7 (343-445)||(28420942-28421048)
chr7 (343-445)||(35147986-35148093)
chr7 (343-445)||(20239021-20239127)
chr7 (343-445)||(22741901-22742014)
chr7 (342-445)||(5849595-5849703)
chr7 (348-402)||(26381185-26381239)
chr7 (365-445)||(43540055-43540138)
chr7 (343-438)||(5979156-5979256)
chr7 (343-402)||(26383742-26383806)
[»] chr3 (24 HSPs)
chr3 (343-445)||(10244317-10244423)
chr3 (343-445)||(49151682-49151788)
chr3 (343-445)||(49157749-49157855)
chr3 (341-438)||(10238193-10238294)
chr3 (341-445)||(11839706-11839814)
chr3 (343-445)||(28964938-28965042)
chr3 (346-445)||(55003398-55003501)
chr3 (343-445)||(11846046-11846152)
chr3 (342-445)||(17055774-17055882)
chr3 (343-436)||(30051085-30051182)
chr3 (339-445)||(38449044-38449152)
chr3 (349-445)||(53069043-53069143)
chr3 (342-445)||(8331857-8331964)
chr3 (343-438)||(48128030-48128129)
chr3 (343-445)||(10760633-10760739)
chr3 (343-445)||(38455535-38455639)
chr3 (343-445)||(10766854-10766960)
chr3 (343-445)||(42191203-42191309)
chr3 (343-445)||(42197145-42197251)
chr3 (343-438)||(24643534-24643634)
chr3 (347-445)||(17593268-17593371)
chr3 (402-445)||(34300567-34300610)
chr3 (343-424)||(13445142-13445227)
chr3 (353-404)||(46656798-46656850)
[»] chr1 (13 HSPs)
chr1 (343-445)||(50306259-50306365)
chr1 (342-445)||(34740056-34740163)
chr1 (343-445)||(1078294-1078400)
chr1 (343-445)||(25381518-25381624)
chr1 (343-445)||(25387487-25387593)
chr1 (342-445)||(44410080-44410187)
chr1 (343-445)||(24926738-24926843)
chr1 (343-445)||(24963685-24963791)
chr1 (343-445)||(31058114-31058220)
chr1 (343-445)||(27955231-27955336)
chr1 (357-433)||(38151973-38152052)
chr1 (350-438)||(31051621-31051718)
chr1 (343-438)||(12183562-12183666)
[»] scaffold0440 (1 HSPs)
scaffold0440 (343-445)||(1176-1283)
[»] scaffold0236 (1 HSPs)
scaffold0236 (343-445)||(5605-5711)
[»] chr4 (17 HSPs)
chr4 (343-438)||(24288064-24288161)
chr4 (343-438)||(50168670-50168769)
chr4 (342-445)||(26956811-26956918)
chr4 (343-433)||(4632869-4632963)
chr4 (343-445)||(10733229-10733335)
chr4 (343-445)||(10739322-10739428)
chr4 (343-445)||(10946998-10947104)
chr4 (343-445)||(10953091-10953197)
chr4 (343-445)||(26963324-26963430)
chr4 (343-445)||(6257188-6257294)
chr4 (343-445)||(33458249-33458356)
chr4 (343-445)||(49976657-49976763)
chr4 (343-445)||(48161029-48161132)
chr4 (343-445)||(48167248-48167351)
chr4 (348-429)||(34308060-34308144)
chr4 (348-438)||(55473133-55473224)
chr4 (409-445)||(3769637-3769673)
[»] scaffold0012 (1 HSPs)
scaffold0012 (343-445)||(172873-172979)
[»] scaffold0363 (1 HSPs)
scaffold0363 (343-445)||(605-708)
[»] scaffold0208 (2 HSPs)
scaffold0208 (343-438)||(6600-6699)
scaffold0208 (343-438)||(12473-12572)
[»] scaffold0531 (1 HSPs)
scaffold0531 (114-171)||(8209-8266)
[»] scaffold1114 (1 HSPs)
scaffold1114 (343-402)||(1201-1261)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 15596119 - 15596325
Alignment:
Q  21 tgattctagggtaatcgacatcaaaattgtgaattgatcaaatgaaatgagatacataaaaataactgtgattttaaattcgtgacgatttggaatgtta 120  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||| ||||||||||||||    
T  15596119 tgattctagggtaaccgacatcaaagttgtgaattgatcaaatgaaatgagatacataaaaataattgtgacattatattcgtgaagatttggaatgtta 15596218  T
Q  121 tattttggtgattttgtgactaatgtggattgaactgatatatcatgtttttaaattttttgatctgtcacggttccaatttgatttctttcgtgtcctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15596219 tattttggtgattttgtgactaatgtggattgaactgatatat-atgtttttaaattttttgatctgtcacggtttcaatttgatttctttcgtgtcctt 15596317  T
Q  221 ctcaatta 228  Q
    ||||||||    
T  15596318 ctcaatta 15596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 15596658 - 15596748
Alignment:
Q  252 aaacttacccctagttgtttgtgtttgtttgaccttgctctatgcaataaatacaaagttgattgtcttgaagttcaagtagggagaattc 342  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  15596658 aaacttacccctagttgtttgtgtttgtttgactttgctctatgcaataaatacaaagttgattgtcatgaagtccaagtagggagaattc 15596748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 340 - 445
Target Start/End: Complemental strand, 9935458 - 9935349
Alignment:
Q  340 ttctgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgatta 435  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||    
T  9935458 ttctgttggaaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaatatgatta 9935359  T
Q  436 tgagcggatc 445  Q
    ||| ||||||    
T  9935358 tgatcggatc 9935349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 32897190 - 32897083
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  32897190 ctgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 32897091  T
Q  438 agcggatc 445  Q
    | ||||||    
T  32897090 atcggatc 32897083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 32891065 - 32890959
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  32891065 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 32890966  T
Q  439 gcggatc 445  Q
     ||||||    
T  32890965 tcggatc 32890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 14799398 - 14799505
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  14799398 ctgttggaaatttaggtcttaatataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 14799497  T
Q  438 agcggatc 445  Q
    | ||||||    
T  14799498 atcggatc 14799505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 7771408 - 7771302
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  7771408 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 7771309  T
Q  439 gcggatc 445  Q
     ||||||    
T  7771308 tcggatc 7771302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 42992989 - 42993093
Alignment:
Q  346 tggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagc 440  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||| |    
T  42992989 tggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatc 42993088  T
Q  441 ggatc 445  Q
    |||||    
T  42993089 ggatc 42993093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 1882734 - 1882841
Alignment:
Q  343 tgttggaaatttaggtcttaata--aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||||   |||||||||||| ||||||||||||||||| ||||    
T  1882734 tgttggaaatttaggtcttaatataaaacagatttcatagaacatgttcaacaattaagaatcaatagcggaagcaaacaaaacattgaacatgaatatg 1882833  T
Q  438 agcggatc 445  Q
    | ||||||    
T  1882834 aacggatc 1882841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 5542141 - 5542249
Alignment:
Q  341 tctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    |||||||||||||||||| |||||| ||| |||||| |||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  5542141 tctgttggaaatttaggttttaatataaatagattttataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattat 5542240  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  5542241 gatcggatc 5542249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 14418114 - 14418011
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| || |   | |||||||||||| ||||||||||||||||||||||| ||    
T  14418114 tgttggaaatttaggtcttaataaaaacagatttcataaaacatgtttaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcg 14418015  T
Q  442 gatc 445  Q
    ||||    
T  14418014 gatc 14418011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 39727300 - 39727402
Alignment:
Q  343 tgttggaaatttaggtcttaataa----aacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgatta 435  Q
    ||||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||   || ||||||||| ||||||||||||||||||||    
T  39727300 tgttggaaatttaggtcttaataataaaaatagatttcataaaacatgttcaacaattatgaatcaataacggaagcaaacaaaacattgaacatgatta 39727399  T
Q  436 tga 438  Q
    |||    
T  39727400 tga 39727402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 36819147 - 36819041
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||   ||| |||||||| |||||||||||| ||||||||||    
T  36819147 tgttggaaatttaggtcttaatataaacaaatctcataatacatgttcaacaattatgaatcaatagtggaagcaaacaaaacattgaatatgattatga 36819048  T
Q  439 gcggatc 445  Q
     ||||||    
T  36819047 tcggatc 36819041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 24250278 - 24250173
Alignment:
Q  343 tgttggaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgag 439  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||   |||||||| ||| ||||| ||||||||| |||||||     
T  24250278 tgttgaaaatttaggtcttaaaaaaacatatttcataaaacatgttgaacaaatatgaatcaatagcggaaacaaacaaaatattgaacattattatgat 24250179  T
Q  440 cggatc 445  Q
    ||||||    
T  24250178 cggatc 24250173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 10706020 - 10705920
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||| ||||||  | |||   ||||| |||||| ||||||||||||||||||||||    
T  10706020 tgttggaaatttaggtcttaattaaaaacagatttcataatacatgtttaacaatcgtaaatcaatagcgtaagcaaacaaaacattgaacatgattatg 10705921  T
Q  438 a 438  Q
    |    
T  10705920 a 10705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 1171493 - 1171414
Alignment:
Q  348 gaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacatt 424  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |   |||||||||| |||||||||    
T  1171493 gaaatttaggtcttaataaaacagatttcatgaaacatattcaacaattatgattcaaccgcggaagcaaacaaaacatt 1171414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 438
Target Start/End: Original strand, 39735558 - 39735634
Alignment:
Q  365 aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||| |||||||||||||||||||||||||||||||||   ||||||||| ||  |||| |||||||||||||||||    
T  39735558 aaaatagatttcataaaacatgttcaacaattatgaatcaatagcggaagtaaataaaatattgaacatgattatga 39735634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15596600 - 15596640
Alignment:
Q  227 tattttatactgtaacatgtattcaaaacttacccctagtt 267  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  15596600 tattttatattgtaacatgtattcaaaacttacccctagtt 15596640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 39689838 - 39689782
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattat 398  Q
    ||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39689838 tgttggagacttaggttttaataaaaacagatttcataaaacatgttcaacaattat 39689782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 22219706 - 22219806
Alignment:
Q  350 aatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaat---tagcggaag-caaccaaaacattgaacatgattatgagcggat 444  Q
    |||||||||||||||||||  |||||||||||||||||||||| | ||||||||   |||| ||||  ||  ||||| |||||||||||||||| |||||    
T  22219706 aatttaggtcttaataaaaagagatttcataaaacatgttcaatagttatgaatcaatagcagaagaaaaagaaaactttgaacatgattatgatcggat 22219805  T
Q  445 c 445  Q
    |    
T  22219806 c 22219806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 10700186 - 10700132
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaat 395  Q
    ||||||||||||||||||||||  |||||| ||||||||| ||||||| ||||||    
T  10700186 tgttggaaatttaggtcttaattaaaaacatatttcataatacatgtttaacaat 10700132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 32035267 - 32035375
Alignment:
Q  341 tctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  32035267 tctgttggaaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattat 32035366  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  32035367 gatcggatc 32035375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 4580304 - 4580410
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||   |||||||||||| |||||||||||||||||||||||    
T  4580304 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 4580403  T
Q  439 gcggatc 445  Q
     ||||||    
T  4580404 tcggatc 4580410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 8650786 - 8650892
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  8650786 tgttgtaaatttagctcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 8650885  T
Q  439 gcggatc 445  Q
     ||||||    
T  8650886 tcggatc 8650892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 8662764 - 8662870
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  8662764 tgttgtaaatttagctcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 8662863  T
Q  439 gcggatc 445  Q
     ||||||    
T  8662864 tcggatc 8662870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 21190849 - 21190955
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  21190849 tgttggaaatttaggtcttattataaacagatttcataaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 21190948  T
Q  439 gcggatc 445  Q
     ||||||    
T  21190949 tcggatc 21190955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 21782736 - 21782842
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  21782736 tgttagaaatttaggtcttaatataaacagatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 21782835  T
Q  439 gcggatc 445  Q
     ||||||    
T  21782836 tcggatc 21782842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 31756195 - 31756304
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa---cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgatta 435  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    | |||||||||  |||||||||||||||||||    
T  31756195 ctgttggaaatttaggtcttaataaaaaaacagatttcataaaacatgttcaacaattatgaatcaacaacggaagcaaataaaacattgaacatgatta 31756294  T
Q  436 tgagcggatc 445  Q
    | | ||||||    
T  31756295 taatcggatc 31756304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 21197004 - 21197110
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||||   |||||||||||| ||||||||||||||| | |||||    
T  21197004 tgttggaaatttaggtcatagtaaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatga 21197103  T
Q  439 gcggatc 445  Q
     ||||||    
T  21197104 acggatc 21197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 18778760 - 18778653
Alignment:
Q  343 tgttggaaatttaggtcttaat-aaaacagatttcataaaa-catgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||   |||||||||||| |||||| |||||||| ||||||    
T  18778760 tgttggaaatttaggtcttaattaaaacaaatttcataaaaacatgttcaataattatgaatcaatagcggaagcaaacaaaacgttgaacataattatg 18778661  T
Q  438 agcggatc 445  Q
    | ||||||    
T  18778660 atcggatc 18778653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 25354388 - 25354281
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||| |||||||  |||||||||||||||| ||||||||||||||  | |||   |||||||||||| |||| |||||||||||||||||    
T  25354388 tgttggaaatttagatcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaagcattgaacatgattatg 25354289  T
Q  438 agcggatc 445  Q
    | ||||||    
T  25354288 atcggatc 25354281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 17581797 - 17581705
Alignment:
Q  348 gaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    ||||||||| ||| ||||||| || | ||||||||||||||||||| |||||||||   |||||||||||| |||||||||||||||||||||    
T  17581797 gaaatttagatctaaataaaaacataattcataaaacatgttcaactattatgaatcgatagcggaagcaaacaaaacattgaacatgattat 17581705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 6098158 - 6098060
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa--cagatttcataaaacatgttcaacaa---ttatgaat----tagcggaagcaaccaaaacattgaacatga 432  Q
    ||||| ||| ||||||||||||||||  || |||||||||||||||||||||||   ||||||||    ||||||||| |  |||||||||||||||||    
T  6098158 tgttgaaaacttaggtcttaataaaaaacaaatttcataaaacatgttcaacaacaattatgaatcaaatagcggaagtagacaaaacattgaacatga 6098060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 445
Target Start/End: Complemental strand, 6102803 - 6102693
Alignment:
Q  344 gttggaaatttaggtcttaataaaa--cagatttcataaaacatgttcaacaa---ttatgaat----tagcggaagcaaccaaaacattgaacatgatt 434  Q
    |||||||||||||||||| ||||||  || ||||||||||| |||||||||||   | ||||||    |||||||||||  ||||||||||||||| | |    
T  6102803 gttggaaatttaggtcttcataaaaaacatatttcataaaatatgttcaacaacaatcatgaatcaaatagcggaagcagacaaaacattgaacatcaat 6102704  T
Q  435 atgagcggatc 445  Q
    |||| ||||||    
T  6102703 atgaacggatc 6102693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 21770546 - 21770647
Alignment:
Q  349 aaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcgga 443  Q
    ||||||||||||||||  |||||||||||||||| ||||| ||||||||  | |||   ||| ||||| || ||||||||||||||| | ||||| ||||    
T  21770546 aaatttaggtcttaattaaaaacagatttcataatacatgatcaacaatcgtaaattaatagaggaagtaaacaaaacattgaacataaatatgaacgga 21770645  T
Q  444 tc 445  Q
    ||    
T  21770646 tc 21770647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 25343736 - 25343694
Alignment:
Q  403 tagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||    
T  25343736 tagcagaagcaaacaaaacattgaacatgattatgatcggatc 25343694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 34603336 - 34603419
Alignment:
Q  364 taaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    ||||||| |||| |||||||||||  |||||||||||||   |||| ||||||| |||| |||||||||| ||||||| ||||||    
T  34603336 taaaacatatttaataaaacatgtgtaacaattatgaataaatagc-gaagcaaacaaagcattgaacataattatgatcggatc 34603419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 34724613 - 34724696
Alignment:
Q  364 taaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    ||||||| |||| |||||||||||  |||||||||||||   |||| ||||||| |||| |||||||||| ||||||| ||||||    
T  34724613 taaaacatatttaataaaacatgtgtaacaattatgaataaatagc-gaagcaaacaaagcattgaacataattatgatcggatc 34724696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 28682928 - 28683034
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  28682928 tgttggaaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 28683027  T
Q  439 gcggatc 445  Q
     ||||||    
T  28683028 tcggatc 28683034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 36750591 - 36750485
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  36750591 tgttggaaatttaagtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 36750492  T
Q  439 gcggatc 445  Q
     ||||||    
T  36750491 tcggatc 36750485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 348 - 445
Target Start/End: Original strand, 35090637 - 35090738
Alignment:
Q  348 gaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcgga 443  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||| ||||    
T  35090637 gaaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgga 35090736  T
Q  444 tc 445  Q
    ||    
T  35090737 tc 35090738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 35438692 - 35438798
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||   ||||||||||||  ||||||||||||||||||||||    
T  35438692 ctgttggaaatttaggccttaataaaacaaatttcataaaacatgttcaacagttatgaatcaatagcggaagcaaataaaacattgaacatgattatga 35438791  T
Q  439 gcggatc 445  Q
     ||||||    
T  35438792 tcggatc 35438798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 35084665 - 35084765
Alignment:
Q  349 aaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggat 444  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||||| |||||    
T  35084665 aaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatgatcggat 35084764  T
Q  445 c 445  Q
    |    
T  35084765 c 35084765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 13456276 - 13456170
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |||||   |||||||||||| ||||||||||||| |||||||||    
T  13456276 tgttggaaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatga 13456177  T
Q  439 gcggatc 445  Q
     ||||||    
T  13456176 tcggatc 13456170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 13462217 - 13462111
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |||||   |||||||||||| ||||||||||||| |||||||||    
T  13462217 tgttggaaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatga 13462118  T
Q  439 gcggatc 445  Q
     ||||||    
T  13462117 tcggatc 13462111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 348 - 445
Target Start/End: Original strand, 13149674 - 13149775
Alignment:
Q  348 gaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcgga 443  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||  | |||   |||||||||||| ||||||||||||||||||||||| ||||    
T  13149674 gaaatttaggtcttaatataaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatgatcgga 13149773  T
Q  444 tc 445  Q
    ||    
T  13149774 tc 13149775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 31008533 - 31008425
Alignment:
Q  342 ctgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||||||||  | |||   |||||||||||| ||||| |||||||||||||||    
T  31008533 ctgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattat 31008434  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  31008433 gatcggatc 31008425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 30965505 - 30965398
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||| |||||||||||||||||  |||||||||||||||| |||||||||||||| || |||   |||||||||||| ||||| ||||||||||||||||    
T  30965505 tgttagaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcataaatcaatagcggaagcaaacaaaatattgaacatgattatg 30965406  T
Q  438 agcggatc 445  Q
    | ||||||    
T  30965405 atcggatc 30965398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 31002554 - 31002447
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||  | |||   |||||||||||| ||||| ||||||||||||||||    
T  31002554 tgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattatg 31002455  T
Q  438 agcggatc 445  Q
    | ||||||    
T  31002454 atcggatc 31002447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 11048536 - 11048635
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||| |||||  | |||||||||||||||| ||||||||||||||   |||| ||||||| |||||||||||||||||||||||    
T  11048536 tgttggaaatttaggtcttattaaaaataaatttcataaaacatgtccaacaattatgaatcaatagctgaagcaaacaaaacattgaacatgattatga 11048635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 44716787 - 44716894
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaacc-aaaacattgaacatgattatg 437  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||||||  |||| |||   ||||||||||||   |||||||||||||||||||||    
T  44716787 tgttagaaatttaggtcttaataaaaacagatatcataaaacatgttcaacggttatcaatcaatagcggaagcaaaagaaaacattgaacatgattatg 44716886  T
Q  438 agcggatc 445  Q
    | ||||||    
T  44716887 atcggatc 44716894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 23343737 - 23343638
Alignment:
Q  343 tgttggaaatttaggtcttaataa-aacagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||| ||||||||| |||| |||| || ||||||||||||||||||||||| |||| |||| |   |||||||||| ||||||||||||||||| |||||    
T  23343737 tgtttgaaatttagatcttgataagaagagatttcataaaacatgttcaacgattacgaatcaacagcggaagcaaacaaaacattgaacatgaatatga 23343638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 28525368 - 28525475
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  28525368 ctgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 28525467  T
Q  438 agcggatc 445  Q
    | ||||||    
T  28525468 atcggatc 28525475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 28531465 - 28531571
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  28531465 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 28531564  T
Q  439 gcggatc 445  Q
     ||||||    
T  28531565 tcggatc 28531571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 7389531 - 7389637
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  7389531 tgttggaaatttaggtcttaatataaacaaatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 7389630  T
Q  439 gcggatc 445  Q
     ||||||    
T  7389631 tcggatc 7389637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 12686161 - 12686268
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||    
T  12686161 ctgttggaaatttagctcttgatataaacagatttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatg 12686260  T
Q  438 agcggatc 445  Q
    | ||||||    
T  12686261 atcggatc 12686268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 12692264 - 12692370
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  12692264 tgttggaaatttagctcttgatataaacagatttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 12692363  T
Q  439 gcggatc 445  Q
     ||||||    
T  12692364 tcggatc 12692370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 30384359 - 30384467
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa---cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    |||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||| ||||||    
T  30384359 tgttggaaatttaggttttaataaaaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacacgattat 30384458  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  30384459 gatcggatc 30384467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 352 - 445
Target Start/End: Complemental strand, 24054502 - 24054405
Alignment:
Q  352 tttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||| ||||||    
T  24054502 tttaggtcttaataaaaacagatttcataaaacatgttcaacaattataaatctatagcggaagcaaacaaaacattgaacatgattatgatcggatc 24054405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 41297453 - 41297347
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||   |||| ||||||| ||||||||||||||| |||||||    
T  41297453 tgttggaaatttgggtcttaatataaagagatttcataatacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacataattatga 41297354  T
Q  439 gcggatc 445  Q
     ||||||    
T  41297353 tcggatc 41297347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 32096943 - 32097043
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||  | |||   |||||||||||| ||||||||||||||||||||||    
T  32096943 tgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatg 32097042  T
Q  438 a 438  Q
    |    
T  32097043 a 32097043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 438
Target Start/End: Original strand, 16215156 - 16215256
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||| |||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||   |||||||||||| ||||||||| ||||||||||||    
T  16215156 ctgttagaaatttaggtctttataaaaacagatttcataacacatattcaacaattatgaatcaatagcggaagcaaacaaaacatttaacatgattatg 16215255  T
Q  438 a 438  Q
    |    
T  16215256 a 16215256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 14610321 - 14610220
Alignment:
Q  349 aaatttaggtcttaataaaa---cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcgg 442  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||   ||||||||||||  ||| |||||||||||||||||| |||    
T  14610321 aaatttaggtcttaacaaaaaaacagatttcataaaacatgttcaacaattatgaattaatagcggaagcaaataaaccattgaacatgattatgatcgg 14610222  T
Q  443 at 444  Q
    ||    
T  14610221 at 14610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 438
Target Start/End: Original strand, 32094137 - 32094242
Alignment:
Q  338 aattctgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatga 432  Q
    |||| ||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||  | |||   |||||||||||| |||||||||||||||||    
T  32094137 aattgtgttggaaatttaggtcttaattaaaaacagattttataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatga 32094236  T
Q  433 ttatga 438  Q
    ||||||    
T  32094237 ttatga 32094242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 438
Target Start/End: Complemental strand, 26510000 - 26509927
Alignment:
Q  365 aaaacagatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||||||||  |||||||| ||| |||||||| ||||||||||||||| |||||||    
T  26510000 aaaacagatttcataaaacatgttcaatcattatgaaatagtggaagcaaacaaaacattgaacataattatga 26509927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 344 - 445
Target Start/End: Original strand, 19066091 - 19066196
Alignment:
Q  344 gttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgag 439  Q
    |||||||||||| |||||||||||| || |||||||||| |||||||||| ||||| |||   |||||||||||| ||||||||| | ||||| |||||     
T  19066091 gttggaaatttaagtcttaataaaaacatatttcataaaccatgttcaacgattataaatcattagcggaagcaaacaaaacattaagcatgaatatgaa 19066190  T
Q  440 cggatc 445  Q
    ||||||    
T  19066191 cggatc 19066196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 30772460 - 30772353
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaat---tagcggaagc-aaccaaaacattgaacatgattatg 437  Q
    |||||||||||||| |||||||||||  | |||||||||||||||||||| ||||||||||    || |||||| ||| |||||| ||||||||||||||    
T  30772460 tgttggaaatttagttcttaataaaaataaatttcataaaacatgttcaataattatgaataaacagtggaagcaaacaaaaacaatgaacatgattatg 30772361  T
Q  438 agcggatc 445  Q
    | ||||||    
T  30772360 atcggatc 30772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 404
Target Start/End: Original strand, 8706454 - 8706510
Alignment:
Q  349 aaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaatta 404  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  8706454 aaatttaggtcttaataaaaatagatttcataaaatatgttcaacaattatgaatta 8706510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 19059747 - 19059853
Alignment:
Q  343 tgttggaaatttaggtcttaat-aaaacagatttcataaaacatgttcaacaattatga---attagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||| |||||| |||||||||||| | |||||| ||||| |   ||||| |||||||| ||||| ||| ||||||| ||| |    
T  19059747 tgttggaaatttaggtcttaataaaaacatatttcataaaacgtattcaacgattataaatcattaggggaagcaaacaaaatattaaacatgaatataa 19059846  T
Q  439 gcggatc 445  Q
     ||||||    
T  19059847 acggatc 19059853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 3817294 - 3817400
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  3817294 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 3817393  T
Q  439 gcggatc 445  Q
     ||||||    
T  3817394 tcggatc 3817400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 3811151 - 3811258
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  3811151 ctgttggaaatgtaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 3811250  T
Q  438 agcggatc 445  Q
    | ||||||    
T  3811251 atcggatc 3811258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 339547 - 339441
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  339547 tgttggaaatttagctcttaatataaagagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 339448  T
Q  439 gcggatc 445  Q
     ||||||    
T  339447 tcggatc 339441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 351962 - 351856
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||    
T  351962 tgttggaaatttagctcttaatataaacagatttcataaaacatgttcaacaattatgaatcaacagcggaagcaaacaaaacattgaacatgattatga 351863  T
Q  439 gcggatc 445  Q
     ||||||    
T  351862 tcggatc 351856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 42767277 - 42767384
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||   |||||||||||| ||||| ||||||||||||||||    
T  42767277 tgttggaaatttaggtcttaattaaaaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattatg 42767376  T
Q  438 agcggatc 445  Q
    | ||||||    
T  42767377 atcggatc 42767384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 12804176 - 12804070
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||   |||||||||||| |||||||||||||||||  ||||    
T  12804176 tgttggaaatttaggtcttaataaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaagcaaaacattgaacatgaacatga 12804077  T
Q  439 gcggatc 445  Q
     ||||||    
T  12804076 acggatc 12804070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 28420942 - 28421048
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  28420942 tgttggaaatttagctcttgatataaacagatttcataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 28421041  T
Q  439 gcggatc 445  Q
     ||||||    
T  28421042 tcggatc 28421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 35147986 - 35148093
Alignment:
Q  343 tgttggaaattt-aggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||    
T  35147986 tgttggaaattttatgtcttaataaaaacagatttcataaaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatg 35148085  T
Q  438 agcggatc 445  Q
    | ||||||    
T  35148086 atcggatc 35148093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 20239127 - 20239021
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||  ||   |||||||||||| |||||||||||||||||||||||    
T  20239127 tgttggaaatttaggtcttaatataaacaaatttcataaaacatgttcaacaatcatacatcaatagcggaagcaaacaaaacattgaacatgattatga 20239028  T
Q  439 gcggatc 445  Q
     ||||||    
T  20239027 tcggatc 20239021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 22741901 - 22742014
Alignment:
Q  343 tgttggaaatttaggtcttaataa-aacagatttcataaaacatgttcaacaattatgaat----------tagcggaagcaaccaaaacattgaacatg 431  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||          |||||||||||| |  |||||||||||||    
T  22741901 tgttggaaatttaggtctcaataagaacaggtttcataaaacatgttcaacaattatgaatgaatcaacaatagcggaagcaaactgaacattgaacatg 22742000  T
Q  432 attatgagcggatc 445  Q
    ||||||| ||||||    
T  22742001 attatgatcggatc 22742014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 5849703 - 5849595
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa-cagatttcataaaac-atgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    |||||| |||||||||||||||||||| || |||| ||||||  ||||||||  |||||||||   |||||||||||||||||||||||||||| | |||    
T  5849703 ctgttgcaaatttaggtcttaataaaaacaaattttataaaattatgttcaatgattatgaatcaatagcggaagcaaccaaaacattgaacataaatat 5849604  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  5849603 gaacggatc 5849595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 402
Target Start/End: Complemental strand, 26381239 - 26381185
Alignment:
Q  348 gaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat 402  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  26381239 gaaatttaggtctaaataaaatagatttcataagacatgttcaacaattatgaat 26381185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 43540138 - 43540055
Alignment:
Q  365 aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    ||||||||||||||| ||||||||||| ||||||||||   ||||||||  ||  |||| ||||||||||||||||| ||||||    
T  43540138 aaaacagatttcatagaacatgttcaataattatgaatcaatagcggaattaaataaaatattgaacatgattatgatcggatc 43540055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 5979156 - 5979256
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||||||| ||||||  | |||   ||||| |||||| ||||  ||||||||||||||||    
T  5979156 tgttgaaaatttaggtcttaattaaaaacagatttcataatacatgttgaacaatcgtaaatcaatagcgaaagcaaacaaactattgaacatgattatg 5979255  T
Q  438 a 438  Q
    |    
T  5979256 a 5979256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 26383806 - 26383742
Alignment:
Q  343 tgttggaaatttaggtcttaataaaacaga-----tttcataaaacatgttcaacaattatgaat 402  Q
    ||||||||||||| |||| |||||||||||     |||||||| |||||||||||||||||||||    
T  26383806 tgttggaaatttaagtctaaataaaacagaatagatttcataagacatgttcaacaattatgaat 26383742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10244317 - 10244423
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  10244317 tgttggaaatttagctcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 10244416  T
Q  439 gcggatc 445  Q
     ||||||    
T  10244417 tcggatc 10244423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 49151788 - 49151682
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  49151788 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 49151689  T
Q  439 gcggatc 445  Q
     ||||||    
T  49151688 tcggatc 49151682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 49157855 - 49157749
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  49157855 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 49157756  T
Q  439 gcggatc 445  Q
     ||||||    
T  49157755 tcggatc 49157749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 10238193 - 10238294
Alignment:
Q  341 tctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  10238193 tctgttggaaatttagctcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattat 10238292  T
Q  437 ga 438  Q
    ||    
T  10238293 ga 10238294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 341 - 445
Target Start/End: Original strand, 11839706 - 11839814
Alignment:
Q  341 tctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  11839706 tctgttggaaatttaggtcttaatataaacagatttcatgatacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattat 11839805  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  11839806 gatcggatc 11839814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 28965042 - 28964938
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatgagc 440  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |   | |||||||||||| ||||||||||||||||||||||| |    
T  28965042 tgttggaaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatc 28964943  T
Q  441 ggatc 445  Q
    |||||    
T  28964942 ggatc 28964938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 55003398 - 55003501
Alignment:
Q  346 tggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||| |||||||  |||||||||||||||||||||| ||    
T  55003398 tggaaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcagaagcaaataaaacattgaacatgattatgatcg 55003497  T
Q  442 gatc 445  Q
    ||||    
T  55003498 gatc 55003501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 11846046 - 11846152
Alignment:
Q  343 tgttggaaatttaggtcttaat-aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  11846046 tgttggaaatttaggtcttaattaaaacagattttataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatga 11846145  T
Q  439 gcggatc 445  Q
     ||||||    
T  11846146 tcggatc 11846152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 17055774 - 17055882
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa--cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    ||||| |||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  17055774 ctgttcgaaatttaggtcttaataaaaaacagttttcataaaatatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattat 17055873  T
Q  437 gagcggatc 445  Q
    || ||||||    
T  17055874 gatcggatc 17055882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 343 - 436
Target Start/End: Original strand, 30051085 - 30051182
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattat 436  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||||| |||||||||||||||    
T  30051085 tgttgaaaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaatattgaacatgattat 30051182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 445
Target Start/End: Original strand, 38449044 - 38449152
Alignment:
Q  339 attctgttggaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgatta 435  Q
    |||||||||||||||| |||||||||| || ||||||||||| ||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||    
T  38449044 attctgttggaaatttcggtcttaatataa-agatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgatta 38449142  T
Q  436 tgagcggatc 445  Q
    ||| ||||||    
T  38449143 tgatcggatc 38449152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 53069043 - 53069143
Alignment:
Q  349 aaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgagcggat 444  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||| |||||    
T  53069043 aaatttaggtcttaataaaaacagattttataaaacatgttcaacaattataaatcgatagcggaagcaaacaaaacattgaacatgattatgatcggat 53069142  T
Q  445 c 445  Q
    |    
T  53069143 c 53069143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 8331964 - 8331857
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||    
T  8331964 ctgttggaaatttagctcttaatataaatagattttataaaacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatg 8331865  T
Q  438 agcggatc 445  Q
    | ||||||    
T  8331864 atcggatc 8331857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 48128030 - 48128129
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||||||    
T  48128030 tgttggaaatttaggtctcaataaaaacagatttcatgaaacatgttcaacaattatgaatcaatagcggaaacaaacaaaacattgaacatgattatga 48128129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10760633 - 10760739
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||   ||||||||||||  ||||||||||||||||||||||    
T  10760633 tgttggaaatttaggtcttattaaaaacagatttcataatacatgttcaacaattataaatcaatagcggaagcaaataaaacattgaacatgattatga 10760732  T
Q  439 gcggatc 445  Q
     ||||||    
T  10760733 tcggatc 10760739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 38455535 - 38455639
Alignment:
Q  343 tgttggaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatgag 439  Q
    |||||||||||| |||||||||| || ||||||||||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||     
T  38455535 tgttggaaatttcggtcttaatataa-agatttcataatacatgttcaacaattataaatcaatagcggaagcaaacaaaacattgaacatgattatgat 38455633  T
Q  440 cggatc 445  Q
    ||||||    
T  38455634 cggatc 38455639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10766854 - 10766960
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||| ||| |   |||||||||| |||||||||||||||||||||||    
T  10766854 tgttggaaatttaggtcttattaaaaacaaatttcataatacatgttcaacaattataaatcaacagcggaagcaaacaaaacattgaacatgattatga 10766953  T
Q  439 gcggatc 445  Q
     ||||||    
T  10766954 ccggatc 10766960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 42191203 - 42191309
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |||||   |||||||||||| ||||||||||||| |||||||||    
T  42191203 tgttggaaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatga 42191302  T
Q  439 gcggatc 445  Q
     ||||||    
T  42191303 tcggatc 42191309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 42197145 - 42197251
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |||||   |||||||||||| ||||||||||||| |||||||||    
T  42197145 tgttggaaatataggtcttaatataaatagatttcataatacatgttcaacaattgtgaatcaatagcggaagcaaacaaaacattgaacctgattatga 42197244  T
Q  439 gcggatc 445  Q
     ||||||    
T  42197245 tcggatc 42197251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 24643534 - 24643634
Alignment:
Q  343 tgttggaaatttaggtcttaataaaacagatttc--ataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||||||||| ||||||||   ||||||||| ||  |||||||||||||||||||||    
T  24643534 tgttggaaatttaggtcttaataaaacaaacttcatataaaacatgttcaacatttatgaatcaatagcggaagtaaataaaacattgaacatgattatg 24643633  T
Q  438 a 438  Q
    |    
T  24643634 a 24643634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 445
Target Start/End: Original strand, 17593268 - 17593371
Alignment:
Q  347 ggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    ||||||||||||||||||  |||| | ||||||||| | ||||||||||||  | ||| |   |||||||||| ||||||||||||||||||||||| ||    
T  17593268 ggaaatttaggtcttaattaaaaatatatttcataatagatgttcaacaatcgtaaatcaatcgcggaagcaaacaaaacattgaacatgattatgatcg 17593367  T
Q  442 gatc 445  Q
    ||||    
T  17593368 gatc 17593371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 34300610 - 34300567
Alignment:
Q  402 ttagcggaagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  34300610 ttagcggaagcaaacaaaacattgaacatgattatgatcggatc 34300567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 13445227 - 13445142
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacatt 424  Q
    |||| ||||||||||||| |||||||  |||||| ||| |||||||||||||||||| |||   ||||||||||||  ||||||||    
T  13445227 tgttagaaatttaggtctaaataaaaatagatttgatagaacatgttcaacaattataaatcaatagcggaagcaaataaaacatt 13445142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 46656850 - 46656798
Alignment:
Q  353 ttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaatta 404  Q
    |||||||| ||||||| || |||||||||||||||||||| || |||||||||    
T  46656850 ttaggtctaaataaaaacatatttcataaaacatgttcaataaatatgaatta 46656798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 50306365 - 50306259
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||| |    
T  50306365 tgttggaaatttaggtcttaatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattataa 50306266  T
Q  439 gcggatc 445  Q
     ||||||    
T  50306265 tcggatc 50306259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 34740163 - 34740056
Alignment:
Q  342 ctgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||   |||||||||||| ||||||||||||||||||||||    
T  34740163 ctgtaggaaatttaggtcttaatataaacagatttcataaaacatgttcatcaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 34740064  T
Q  438 agcggatc 445  Q
    | ||||||    
T  34740063 atcggatc 34740056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 1078400 - 1078294
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||   |||||||||||| |||||||||||||||||||||||    
T  1078400 tgttggaaatttaggtcttaatataaacagatttcataatacatgttcaacaattattaatcaatagcggaagcaaacaaaacattgaacatgattatga 1078301  T
Q  439 gcggatc 445  Q
     ||||||    
T  1078300 tcggatc 1078294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 25381518 - 25381624
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||   |||||||||||| |||||||||||||||||||||||    
T  25381518 tgttggaaatataggtcttaatataaacagatttcataatacatgttcaacaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 25381617  T
Q  439 gcggatc 445  Q
     ||||||    
T  25381618 tcggatc 25381624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 25387487 - 25387593
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||   |||||||||||| |||||||||||||||||||||||    
T  25387487 tgttggaaatatagatcttaatataaacagatttcataaaacatgttcaacaaatatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 25387586  T
Q  439 gcggatc 445  Q
     ||||||    
T  25387587 tcggatc 25387593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 44410187 - 44410080
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||   |||||||||||| ||||||||||||||| | ||||    
T  44410187 ctgttggaaatttaggtcttactaaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataaatatg 44410088  T
Q  438 agcggatc 445  Q
    | ||||||    
T  44410087 aacggatc 44410080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 24926738 - 24926843
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||| | |||||    
T  24926738 tgttgaaaatttaggtcttaataaaaacagatt-cataaaacatgttcaacgattatgaatcaatagcggaagcaaccaaaacattgaacattaatatga 24926836  T
Q  439 gcggatc 445  Q
     ||||||    
T  24926837 acggatc 24926843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 24963685 - 24963791
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||||| | |||||||   |||||||||||| ||||||||||||||||| |||||    
T  24963685 tgttgaaaatttagatcttaataaaaacagatttcataaaacatgttcaacgaatatgaatcaatagcggaagcaaacaaaacattgaacatgaatatga 24963784  T
Q  439 gcggatc 445  Q
     ||||||    
T  24963785 acggatc 24963791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 31058220 - 31058114
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||  | |||   |||||||||||| |||||||||||||||||||||||    
T  31058220 tgttagaaatttaggtcttaatataaacagatttcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatga 31058121  T
Q  439 gcggatc 445  Q
     ||||||    
T  31058120 tcggatc 31058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 27955336 - 27955231
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatga--attagcggaagcaaccaaaacattgaacatgattatgag 439  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| || ||| || |  | |||||||||||| |||||||||||||||||||||||     
T  27955336 tgttagaaatttaggtcttaataaaaacagatttcataaaacatgtttaataatcataatcaatagcggaagcaaacaaaacattgaacatgattatgat 27955237  T
Q  440 cggatc 445  Q
    ||||||    
T  27955236 cggatc 27955231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 38151973 - 38152052
Alignment:
Q  357 gtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgat 433  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||    ||||||||||| ||||| ||||||||||||    
T  38151973 gtcttaataaaatagatttcataaaacatgttcaacaattattaatcaacagcggaagcaaacaaaatattgaacatgat 38152052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 438
Target Start/End: Complemental strand, 31051718 - 31051621
Alignment:
Q  350 aatttaggtcttaata-aaacagatttcata-----aaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||| ||||||||||||||     | ||||||||||||||  | |||   |||||||||||| |||||||||||||||||||||||    
T  31051718 aatttaggtcttaatataaacagatttcatatcataatacatgttcaacaatcgtaaatcaatagcggaagcaaacaaaacattgaacatgattatga 31051621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 438
Target Start/End: Original strand, 12183562 - 12183666
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaac-----aattatgaat---tagcggaagcaaccaaaacattgaacatgat 433  Q
    |||||||||||||| |||||||||||  ||||||||||||| |||||||||     ||||||||||   ||| |||||||| ||||| ||||||||| ||    
T  12183562 tgttggaaatttagttcttaataaaaatagatttcataaaatatgttcaacaatataattatgaatcaatagtggaagcaaacaaaatattgaacataat 12183661  T
Q  434 tatga 438  Q
    |||||    
T  12183662 tatga 12183666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 1176 - 1283
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||||||||||||||    
T  1176 tgttggaaatttaggtcttaattaaaaacagatttcataaaacatgttcaacaattatgaatcaaaggcggaagcaaacaaaacattgaacatgattatg 1275  T
Q  438 agcggatc 445  Q
    | ||||||    
T  1276 atcggatc 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 5711 - 5605
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  5711 tgttggaaatttagctcttgatataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 5612  T
Q  439 gcggatc 445  Q
     ||||||    
T  5611 tcggatc 5605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 24288161 - 24288064
Alignment:
Q  343 tgttggaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  24288161 tgttggaaatttaggtcttaataaat-agatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 24288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 50168769 - 50168670
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  50168769 tgttggaaatttaggtcttaataaaaccagattacataaaacacgttcaacaattatgaatcaatagcggaagcaaacaaaacattgaacatgattatga 50168670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 26956811 - 26956918
Alignment:
Q  342 ctgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||   ||||||||||||  |||||||||||||| | ||||    
T  26956811 ctgttggaaatttaggtcttaataaaaacagatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaataaaacattgaacataagtatg 26956910  T
Q  438 agcggatc 445  Q
    | ||||||    
T  26956911 aacggatc 26956918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 4632963 - 4632869
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgat 433  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    ||||||||||| ||||||||||||||||||    
T  4632963 tgttggaaatttaggtcttaataaaaacagatttcataaaacatgttcaacaattattaatcaacagcggaagcaaacaaaacattgaacatgat 4632869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10733229 - 10733335
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||  ||||||||||||||||||||||    
T  10733229 tgttggacatttagctcttaacataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatga 10733328  T
Q  439 gcggatc 445  Q
     ||||||    
T  10733329 tcggatc 10733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10739322 - 10739428
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||||||||||||||||||    
T  10739322 tgttggacatttagctcttaacataaacagatttcataaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatga 10739421  T
Q  439 gcggatc 445  Q
     ||||||    
T  10739422 tcggatc 10739428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10946998 - 10947104
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||   ||||||||||||  ||||||||||||||||||||||    
T  10946998 tgttggacatttagctcttaacataaacagatttcataaaacatgttcaacaattatgaatcaatagcggaagcaaataaaacattgaacatgattatga 10947097  T
Q  439 gcggatc 445  Q
     ||||||    
T  10947098 tcggatc 10947104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 10953091 - 10953197
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||   |||| ||||||| |||||||||||||||||||||||    
T  10953091 tgttggacatttagctcttaacataaacagatttcataaaacatgttcaacaattatgaatcaatagcagaagcaaacaaaacattgaacatgattatga 10953190  T
Q  439 gcggatc 445  Q
     ||||||    
T  10953191 tcggatc 10953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 26963324 - 26963430
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||   |||||||||||| ||||||||||||||| | |||||    
T  26963324 tgttggaaatttaggtcttaataaaaacaaatttcataaaacatgttcaacgattatgaatcaatagcggaagcaaacaaaacattgaacataagtatga 26963423  T
Q  439 gcggatc 445  Q
     ||||||    
T  26963424 acggatc 26963430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 6257188 - 6257294
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaatta---gcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| || ||| |   |||||||||| |||||||||||||||||||||||    
T  6257188 tgttggaaatttaggtcttaatataaatagatttcataatacatgttcaacaatcataaatcaacagcggaagcaaacaaaacattgaacatgattatga 6257287  T
Q  439 gcggatc 445  Q
     ||||||    
T  6257288 tcggatc 6257294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 33458249 - 33458356
Alignment:
Q  343 tgttggaaatttaggtcttaat--aaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||||||||||  | |||   |||||||||||| ||||| ||||||||||||||||    
T  33458249 tgttggaaatttaggtcttaattaaaaacagatttcataatatatgttcaacaatcgtaaatcaatagcggaagcaaacaaaatattgaacatgattatg 33458348  T
Q  438 agcggatc 445  Q
    | ||||||    
T  33458349 atcggatc 33458356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 49976763 - 49976657
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||| ||||||||| | ||||||||| || |||||||||||||| ||||||||||||||||   ||||| |||||| |||||||||||| ||||||||||    
T  49976763 tgttagaaatttagattttaataaaaacaaatttcataaaacatattcaacaattatgaatcgatagcgaaagcaaacaaaacattgaatatgattatga 49976664  T
Q  439 gcggatc 445  Q
     ||||||    
T  49976663 tcggatc 49976657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 48161132 - 48161029
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    |||| |||||||||||||||||||||  ||||||||||||| ||||||||| || |   | |||||||||||| ||||||||||||||| ||||||| ||    
T  48161132 tgttagaaatttaggtcttaataaaaatagatttcataaaatatgttcaactatgaatcaatagcggaagcaaacaaaacattgaacataattatgatcg 48161033  T
Q  442 gatc 445  Q
    ||||    
T  48161032 gatc 48161029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 48167351 - 48167248
Alignment:
Q  343 tgttggaaatttaggtcttaataaaac-agatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    |||| |||||||||||||||||||||  ||||||||||||| ||||||||| || |   | |||||||||||| ||||||||||||||| ||||||| ||    
T  48167351 tgttagaaatttaggtcttaataaaaatagatttcataaaatatgttcaactatgaatcaatagcggaagcaaacaaaacattgaacataattatgatcg 48167252  T
Q  442 gatc 445  Q
    ||||    
T  48167251 gatc 48167248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 34308060 - 34308144
Alignment:
Q  348 gaaatttaggtcttaataaaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaaca 429  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||   |||||||||||  ||||| ||||||||    
T  34308060 gaaatttacgtcttaataaaacagattttataaaacatgttcaataattatgaatcaatagcggaagcatacaaaatattgaaca 34308144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 438
Target Start/End: Original strand, 55473133 - 55473224
Alignment:
Q  348 gaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatga 438  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||| ||| |   | ||||||||||||  |||| |||||| ||||||||||    
T  55473133 gaaatttaggtcttaatagaaacaaatttcataaaatatgttcaataataaatcaatagcggaagcaaataaaatattgaatatgattatga 55473224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 3769673 - 3769637
Alignment:
Q  409 aagcaaccaaaacattgaacatgattatgagcggatc 445  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  3769673 aagcaaacaaaacattgaacatgattatgatcggatc 3769637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 172873 - 172979
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaattatgaat---tagcggaagcaaccaaaacattgaacatgattatga 438  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||   |||||||||||| |||||||||||| ||||||||||    
T  172873 tgttgaaaatttaggtcttaatataaacaggtttcataaaacatgttctacaattatgaatcaatagcggaagcaaacaaaacattgaaaatgattatga 172972  T
Q  439 gcggatc 445  Q
     ||||||    
T  172973 tcggatc 172979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 605 - 708
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaattagcggaagcaaccaaaacattgaacatgattatgagcg 441  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| || |   | |||||||||||| ||||||||||||||||||||||| ||    
T  605 tgttggaaatttaggtcttaataaaaacagatttcataaaacatgtttaactatgaatcaatagcggaagcaaacaaaacattgaacatgattatgatcg 704  T
Q  442 gatc 445  Q
    ||||    
T  705 gatc 708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 6699 - 6600
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaatt-atgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||| |||||||| ||||| |||||||||| |||||||||||||| ||||||   |||||||||||| ||||||||||||||||||||||    
T  6699 tgttggaaatttagctcttaatataaaca-atttcataaaccatgttcaacaatttatgaatcaatagcggaagcaaacaaaacattgaacatgattatg 6601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 12572 - 12473
Alignment:
Q  343 tgttggaaatttaggtcttaata-aaacagatttcataaaacatgttcaacaa-ttatgaat---tagcggaagcaaccaaaacattgaacatgattatg 437  Q
    |||||||||||||| |||||||| ||||| |||||||||| ||| |||||||| ||||||||   ||||||||||||  |||||||||||||| ||||||    
T  12572 tgttggaaatttagctcttaatataaaca-atttcataaaccatattcaacaatttatgaatcaatagcggaagcaaataaaacattgaacataattatg 12474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 8266 - 8209
Alignment:
Q  114 aatgttatattttggtgattttgtgactaatgtggattgaactgatatatcatgtttt 171  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  8266 aatgttatgttttggtgattttgtgactaatgtagattgaattgatatatcatatttt 8209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 1261 - 1201
Alignment:
Q  343 tgttggaaatttaggtcttaataaaa-cagatttcataaaacatgttcaacaattatgaat 402  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||    
T  1261 tgttggaaattcagatcttaataaaaacagatttcataaaacatgttcaaccattatgaat 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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