View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_6 (Length: 927)
Name: NF8986_low_6
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_6 |
 | |
|
| [»] scaffold0373 (2 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0286 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 26)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 125 - 910
Target Start/End: Original strand, 5596291 - 5597079
Alignment:
| Q |
125 |
aattaaattcaaatgagagaggcttaaatccaacttgcaacataacatgaaaagaagatagcttttattgaagggaaaatgtgtatcctattattcactc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5596291 |
aattaaattcaaatgagagaggcttaaatccaacttgcaacataacaagaaaagaagatagcttttattgaagggaaaatgtgtatcctattattcactc |
5596390 |
T |
|
| Q |
225 |
acatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5596391 |
acatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgc |
5596490 |
T |
|
| Q |
325 |
aaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatatt |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5596491 |
aaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcataccagtgcttatcatcacttatatt |
5596590 |
T |
|
| Q |
425 |
ttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtcaccaccataagcacatgcgttattatcttcctcaccatatacatta |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5596591 |
ttcattttgaccaggaccggtaacattgtcatccgctggcacatcaacattgtcaccaccataagcacatacgttattatcttcctcaccatatacatta |
5596690 |
T |
|
| Q |
525 |
acatcctcttcttttatcggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttac |
624 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5596691 |
acatcctcttcttttattggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaaccataacattcactttgttag |
5596790 |
T |
|
| Q |
625 |
caggttctagattcgatgttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttat |
722 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5596791 |
caggttctagattcgatgttatgcgctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctctttgtgtaatttat |
5596890 |
T |
|
| Q |
723 |
gatcaacacaccttggcaaccttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcattttt |
821 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5596891 |
gatcaacacaccttggcaacctcctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacgccccttcattttt |
5596990 |
T |
|
| Q |
822 |
gggagctcaaatagtatggaacaacctttgcaactaacggttgaccgattggaactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5596991 |
gggagctcaaatagtatggaacaaccattgcaactaacggttgaccgattggaactcttgtcacatgtgagcaaaaatgaatcccaagt |
5597079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 182 - 910
Target Start/End: Complemental strand, 6762322 - 6761586
Alignment:
| Q |
182 |
atagcttttattgaagggaaaatgtgtatcctattattcactcacatttttatctccaacagcattcttatctacatcaccagaaacaataacatacttg |
281 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6762322 |
atagcttttatttaaaggaaaatgcgtatcctattattcactcacatttttatttccaacagcattcttatctacatcaccagaaacaataacatccttg |
6762223 |
T |
|
| Q |
282 |
tccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatcaccagaaacaatag |
381 |
Q |
| |
|
| |||||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
6762222 |
ttaactgcatcccagttcttctttttatcaggtacatttccgcaaccagaaacggcataattcttgtttgattccacagcatcatcaccagaaacaatag |
6762123 |
T |
|
| Q |
382 |
tattctcattcactgcatgccagtgcttatcatc---acttatattttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtc |
478 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||||||| || | |||||| ||||||||| |||||||||| ||||||||||| || |
|
|
| T |
6762122 |
cattctcattcactgcatggcagtgcttattatcttcacttatattttcatcttcattaggaccagtaacattgacatccgctggtacatcaatattatc |
6762023 |
T |
|
| Q |
479 |
accaccataagcacatgcgttattatcttcctcaccatatacattaacatcctcttcttttatcggtttatcatacaagagagatattgtagtcttctca |
578 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||| || ||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
6762022 |
accaccataagcacatacattattatcttcatcaccatattcaataacatcctcttcttctattggtttatcatacaacagagatactgtagtcttctca |
6761923 |
T |
|
| Q |
579 |
acagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgctctgccaatccacatcctcaaatgaggtta |
678 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
6761922 |
acaatgaaaccctccccaaaaacaaccataaacttcactttgttaccaggttctagatttgatgttatgctctgccaatcctcatcctcaaatgatatta |
6761823 |
T |
|
| Q |
679 |
gtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggcaaccttctgatgttatgttctctgaggaagagtaata |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||| || | |||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
6761822 |
gtgtatctcttttataaacctgaatggttctctttatgtaatttctgtttaacacaccttggaaaccttctgatgttatgttttatgaggaagagtaata |
6761723 |
T |
|
| Q |
777 |
gacaacggacaacatcatactcttcaggttacgccc---ttcatttttgggagctcaaatagtatggaacaacctttgcaactaacggttgaccgattgg |
873 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
6761722 |
gacaacgaacaacatcatactcttcaggttacgccccttttcattgttgggaaatcaaatattatggaacaacctttgcaactaaaggttgaccatttgg |
6761623 |
T |
|
| Q |
874 |
aactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
|| | |||||||| | ||| ||||||||||||||||| |
|
|
| T |
6761622 |
aattattgtcacatgagagtaaaaatgaatcccaagt |
6761586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 269 - 814
Target Start/End: Complemental strand, 6740979 - 6740433
Alignment:
| Q |
269 |
aataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatca |
368 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
6740979 |
aataacatctttgtccactgcatcccagttcttcttattatcatgtacatttttgcaaccagaaacaacttaattcttatttgattccatggaagcatca |
6740880 |
T |
|
| Q |
369 |
ccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacat |
468 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||| |||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
6740879 |
ccagaaacaatagcactctcattcactgcatgcc-gttcttatcttcacttatattttcatcttgaccagcaccagtagcattgttatccgctggcacat |
6740781 |
T |
|
| Q |
469 |
caatattgtcaccaccataagcacatgcgttattatcttcctcaccatatacattaacatcctcttcttttatcggtttatcatacaagagagatattgt |
568 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||| | | ||||||||||||||||||||| |||| |
|
|
| T |
6740780 |
caatattgtcacgaccataagcacatacattattatcttcctcacgatatacaataacatcctcttcttctgttggtttatcatacaagagagatgttgt |
6740681 |
T |
|
| Q |
569 |
agtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgctctgccaatccacatcctca |
668 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||| |
|
|
| T |
6740680 |
agtcttctcaacaatgaatccctccccaaaaacaaccataatcttcaccttgttaccaggttctagatttgatgttatactctgcaaatccacatcttca |
6740581 |
T |
|
| Q |
669 |
aatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggcaaccttctgatgttatgttctctgag- |
765 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
6740580 |
aacgaggttagtgtatctcttttataaacctgaatggttctctttgtgtaatttatgatcaacacaccttggagaccttctgatgttatgttctc-gaga |
6740482 |
T |
|
| Q |
766 |
gaagagtaatagacaacggacaacatcatactcttcaggttacgccctt |
814 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
6740481 |
gaagagtagtagacaataaataacatcatactcttcaggtttcgccctt |
6740433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 543 - 910
Target Start/End: Original strand, 6587053 - 6587423
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||| || | |||||||||||||||||||||||| |||| |
|
|
| T |
6587053 |
ggttcatcatataagagagatattgtagtcttctcaacaatgaaaccctccccaaatacaaccattacctccactttgttaccaggttctagattagatg |
6587152 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttc--tctgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6587153 |
ttatgctctgccaatcctcatcctcaaacgaggttagcgtatctcttttataaacctgaatggttctttttgtgtaatttatgatcaacacaccttggca |
6587252 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||| || ||||| ||| |||||| ||||||| |||| |
|
|
| T |
6587253 |
actatctgatgttatgttttccgaggaagagtaatagacaacgaacaagatcatactcttcaggtttcgtccctttattgttgggatatcaaatattatg |
6587352 |
T |
|
| Q |
840 |
gaacaacctttgcaactaacggttgaccgattggaactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||| | |||||||| | ||| ||||| ||||||||||| |
|
|
| T |
6587353 |
gaacaacctttgcaactaaagcttgaccattcagaattattgtcacaggggaggaaaaacgaatcccaagt |
6587423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 543 - 856
Target Start/End: Complemental strand, 6729716 - 6729400
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||| |||| |||||||| | ||||||||| |||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
6729716 |
ggttcatcatataagagagataatgtagtcttcttaacaaagaaacccttcgcaaaaacaaccataacctccactttgttaccaggttctagatttgatg |
6729617 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||| ||||| ||| |
|
|
| T |
6729616 |
ttatgctctgccaatcctcgtcctcaaaggaggttagtgtatctcttttataaaccagaacggttctctttgtgtaatttatgattaacatacctttgca |
6729517 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttac-gcccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||| ||||||| ||| |
|
|
| T |
6729516 |
accttctgatgttatgttttctggggaagagtaatagacaacgaacaacattatactcttcaggttactccccttcattgttgggacatcaaatattata |
6729417 |
T |
|
| Q |
840 |
gaacaacctttgcaact |
856 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
6729416 |
gaacaaccgttacaact |
6729400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 550 - 867
Target Start/End: Complemental strand, 6816811 - 6816491
Alignment:
| Q |
550 |
catacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgct |
649 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6816811 |
catataagagagatactgtagtattctcaacatggaaaccctccccaaaaacaaccataaacttcactttgttaccaagttctagatttgatgttatgct |
6816712 |
T |
|
| Q |
650 |
ctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggcaaccttct |
747 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
6816711 |
ctgccaatcctcatcatcaaatgagattagtgtatctcttttataaacctgaatggttctctttgtgtaatttatgattaacacaccttggaaaccttct |
6816612 |
T |
|
| Q |
748 |
gatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcagg-ttacgcccttcatttttgggagctcaaatagtatggaacaac |
846 |
Q |
| |
|
||| ||||||| || ||||||||||||||||| | | | || |||||||||||||| ||| ||| ||| |||||| ||||||| ||||||||||| |
|
|
| T |
6816611 |
gatattatgttttccgaggaagagtaatagacgatgaataatctcatactcttcaggtttagtggctttattattgggatatcaaatattatggaacaac |
6816512 |
T |
|
| Q |
847 |
ctttgcaactaacggttgacc |
867 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
6816511 |
ctttgcaactaaaggttgacc |
6816491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 543 - 910
Target Start/End: Complemental strand, 6754690 - 6754320
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||| |||||| ||||||| ||| | |||| | |||||| | ||| |||||||||||||||||||| || | |
|
|
| T |
6754690 |
ggttcatcatataagagagatatcgtagtcttgtcaacaatgaaaccttcctccaaaattaccataacctgcacattgttaccaggttctagatttgacg |
6754591 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||||| ||||||||||| ||| |||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
6754590 |
ttatggtctgccaatcctcatgaccaaaagaggttagagtttctcttttataggcctgaatggttctctttgtgtaatttatgatcaacaaaccttggca |
6754491 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttac-gcccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
|||||| |||||||||||||| | | ||||||||||||| | | |||||||||||||||| ||||| | ||||||||| ||||| ||||||| |||| |
|
|
| T |
6754490 |
accttccgatgttatgttctccgggaaagagtaatagacgatgaacaacatcatactctttaggtttctccccttcattggtgggatatcaaatattatg |
6754391 |
T |
|
| Q |
840 |
gaacaacctttgcaactaacggttgaccgattggaactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||| | |||||||| | ||||||||||||||||||||| |
|
|
| T |
6754390 |
gaacaacctttgcaactaaagcttgaccattcagaattattgtcacaggggagcaaaaatgaatcccaagt |
6754320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 567 - 910
Target Start/End: Complemental strand, 6797931 - 6797588
Alignment:
| Q |
567 |
gtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgctctgccaatccacatcct |
666 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||||| | |||||||||||||||||||| ||| ||||||||| | |||||||| |||| | |
|
|
| T |
6797931 |
gtagtcttctcaacaatgaatccctccccaaaaacaaccataacctccactttgttaccaggttctacatttgatgttatggtatgccaatcttcatcat |
6797832 |
T |
|
| Q |
667 |
caaatgaggttagtgtatctcttttataaacctgaatgg--ttctctgtgtaatttatgatcaacacaccttggcaaccttctgatgttatgttctctga |
764 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||| |||| |||||| |||||||| |||| ||| ||||||||||||||||||||| | || | |
|
|
| T |
6797831 |
caaaggaggttagtgtatctcttttatatgcttgaatggttttctttgtgtagtttatgattaacaaaccatggcaaccttctgatgttatgatttccgg |
6797732 |
T |
|
| Q |
765 |
ggaagagtaatagacaacggacaacatcatactcttcaggttacgcccttcatttttgggagctcaaatagtatggaacaacctttgcaactaacggttg |
864 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||| ||| ||||||||||||||| | | |||| |
|
|
| T |
6797731 |
ggaagagtaatagacaacggataacatcatactcttcaggtta--ctcttcatttttgggacatcaaattttatcgaacaacctttgcaattgaaggtta |
6797634 |
T |
|
| Q |
865 |
accgattggaactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
||| | || | | |||||||| ||||||||||||||||||||| |
|
|
| T |
6797633 |
accattcagacttatagtcacaagggagcaaaaatgaatcccaagt |
6797588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 550 - 867
Target Start/End: Original strand, 6544180 - 6544500
Alignment:
| Q |
550 |
catacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgct |
649 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||| |||| ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| | |
|
|
| T |
6544180 |
catataagagagatattgttgtcttctctacaatgaatccctccccaaaaacaatcataacctccactttgttaccaggttctagatttgatgttatgtt |
6544279 |
T |
|
| Q |
650 |
ctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggt--tctctgtgtaatttatgatcaacacaccttggcaaccttct |
747 |
Q |
| |
|
|| |||||| |||||| ||| || ||| |||||||||||||||| |||||||||| ||| ||||| ||| ||||| |||||||| |||||||||||| |
|
|
| T |
6544280 |
cttccaatcatcatccttaaaggaagttggtgtatctcttttataggcctgaatggttgtctttgtgtgattaatgattaacacaccatggcaaccttct |
6544379 |
T |
|
| Q |
748 |
gatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatggaacaac |
846 |
Q |
| |
|
| |||||||||||| | | |||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||| |||||| |||||| || | |
|
|
| T |
6544380 |
gctgttatgttctccggagtagagtaatagacgacggacaacatcatactcttcaagttacgccccttcattgttgggatatcaaatcttatggagcatc |
6544479 |
T |
|
| Q |
847 |
ctttgcaactaacggttgacc |
867 |
Q |
| |
|
| | |||||||| |||||||| |
|
|
| T |
6544480 |
catggcaactaaaggttgacc |
6544500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 588 - 907
Target Start/End: Complemental strand, 6652460 - 6652138
Alignment:
| Q |
588 |
ccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgctctgccaatccacatcctcaaatgaggttagtgtatctc |
687 |
Q |
| |
|
|||||| ||||||||| |||||| | |||||||||| ||| |||||||| ||||||||||||||||||||| ||||||| || ||||||||||| |||| |
|
|
| T |
6652460 |
ccctcctcaaaaacaaccataacctctactttgttactaggctctagatttgatgttatgctctgccaatcctcatcctcgaaggaggttagtgtgtctc |
6652361 |
T |
|
| Q |
688 |
ttttataaacctgaatggtt--ctctgtgtaatttatgatcaacacaccttggcaaccttctgatgttatgttctctgaggaagagtaatagacaacgga |
785 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||| | |||| | |||| ||||||||||||||| ||| | |
|
|
| T |
6652360 |
ttttataggcctgaatggttgcctttgtgtaatttatgatcaacacaccttggcatccttctgaagctatgctttctggggaagagtaatagacgacgaa |
6652261 |
T |
|
| Q |
786 |
caacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatggaacaacctttgcaactaacggttgaccgattggaactgttgtca |
884 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||| | |||| |||| |||||||||| | |||| || || ||| |||||||| |
|
|
| T |
6652260 |
caacatcatactcttcaggttacgccccttcattgttgggagatcaaacattatgcaacagcctttgcaacggaaggtttgccaatcagaattgttgtca |
6652161 |
T |
|
| Q |
885 |
caagtgagcaaaaatgaatccca |
907 |
Q |
| |
|
|| | ||||| |||||||||||| |
|
|
| T |
6652160 |
caggggagcacaaatgaatccca |
6652138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 558 - 867
Target Start/End: Complemental strand, 6838863 - 6838551
Alignment:
| Q |
558 |
agagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgctctgccaat |
657 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| ||||| ||||||| |||||| | |||||||||||||||||||||| | || |||| | || |||||| |
|
|
| T |
6838863 |
agagatattgtagtcttgtcagcaatgaaaccttcccctaaaacaaccataacctccactttgttaccaggttctagaattgacgttacggtccgccaat |
6838764 |
T |
|
| Q |
658 |
ccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggcaaccttctgatgttat |
755 |
Q |
| |
|
|| ||| |||| |||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||| || |||||||||| ||| |
|
|
| T |
6838763 |
cctcatggccaaaagaggttagagtatctcttttgtaaacctgaatgattctctttgtgtaatttatgatcaatacaccttgacacccttctgatgctat |
6838664 |
T |
|
| Q |
756 |
gttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatggaacaacctttgcaa |
854 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||| ||||||||||||||||| || ||||| ||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6838663 |
gttctccggggaagagtaatagacaatgaacaatatcatactcttcaggtttcgcccctttattgttgggatatcaaatattatggaacaacctttgcaa |
6838564 |
T |
|
| Q |
855 |
ctaacggttgacc |
867 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
6838563 |
ctaaagcttgacc |
6838551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 550 - 910
Target Start/End: Original strand, 6531140 - 6531503
Alignment:
| Q |
550 |
catacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgct |
649 |
Q |
| |
|
|||| |||||| ||||||| |||||||| ||| |||| ||||| |||||||||| || ||| | ||||| ||||||||||||||||| ||| ||||| | |
|
|
| T |
6531140 |
catataagagatatattgttgtcttctccacaatgaatccctctccaaaaacaagcacaacctccacttcattaccaggttctagatttgattttatgtt |
6531239 |
T |
|
| Q |
650 |
ctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggt--tctctgtgtaatttatgatcaacacaccttggcaaccttct |
747 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||| ||| ||||| |||||||| ||| |||||||| |
|
|
| T |
6531240 |
ctgccaatcctcatcctcaaaggaggttagtgtatctcttttataggcctgaatggttgtctttgtgtgattaatgattaacacaccatggtaaccttct |
6531339 |
T |
|
| Q |
748 |
gatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttac-gcccttcatttttgggagctcaaatagtatggaacaac |
846 |
Q |
| |
|
| |||||||||||| | | |||||||||||| ||| |||||||||||||||||| || || ||||||||| |||||| ||||||| ||| ||| ||| |
|
|
| T |
6531340 |
gctgttatgttctccggagtagagtaatagacgacgaacaacatcatactcttcaagtcactccccttcattgttgggacatcaaatattatagaagaac |
6531439 |
T |
|
| Q |
847 |
ctttgcaactaacggttgaccgattggaactgttgtcacaagtgagcaaaaatgaatcccaagt |
910 |
Q |
| |
|
|||||||||||| |||| ||| || || | |||||||| | ||||||||||||||| ||||| |
|
|
| T |
6531440 |
ctttgcaactaaaggttaaccaatcagatatattgtcacaggggagcaaaaatgaatcgcaagt |
6531503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 543 - 863
Target Start/End: Original strand, 6620262 - 6620585
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| |||||||||| ||| || || || ||| |||| |||||| |||||||| |||||| | |||| ||||||||||||||||| | |||| |
|
|
| T |
6620262 |
ggttcatcatataagagagatactgttgttttttctacattgaatccctccgcaaaaacagccataacctccactgtgttaccaggttctagacttgatg |
6620361 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggt--tctctgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||| | ||| ||| ||| |||||||||| |||| || ||||||||||||||| |||||||| | ||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
6620362 |
ttaagttcttccagtcctcatcctcaaaggaggctaatgtatctcttttataggcctgaatgtttgtctttgtgtgattaatgatcaacacaccttggca |
6620461 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||| |
|
|
| T |
6620462 |
accttctgatgttatgttctcctgtgaagagtaataaatgacggacaacatcatactcttcaggttacgccccttcattgttgggatatcaaatataatg |
6620561 |
T |
|
| Q |
840 |
gaacaacctttgcaactaacggtt |
863 |
Q |
| |
|
||||| |||| |||||||| |||| |
|
|
| T |
6620562 |
gaacatccttggcaactaaaggtt |
6620585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 543 - 856
Target Start/End: Original strand, 6497268 - 6497584
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| |||||||||| | | |||||||| ||| |||| ||||||||||||||||||||||| | |||||||||||||| ||||||||| |||| |
|
|
| T |
6497268 |
ggttgatcatataagagagataattttgtcttctctacaatgaatccctccccaaaaacaatcataacttccactttgttaccagattctagatttgatg |
6497367 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggt--tctctgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||| ||||||| || |||||||| | |||||||| ||| ||||| ||||||||||||||| | |||||| |
|
|
| T |
6497368 |
ttatgctcttccaatcctcatggccaaaagagtttagtgtttcacttttataggcatgaatggttgtctttgtgtgatttatgatcaacacgctttggca |
6497467 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttac-gcccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
|||||||||||||||||| || | || ||||||||| || || |||||||||||||||||| ||||| ||||||||| |||||| |||||| ||| |
|
|
| T |
6497468 |
accttctgatgttatgttgtccggtgatgagtaataggcagcgaacaacatcatactcttcaagttactccccttcattgttgggacatcaaattttata |
6497567 |
T |
|
| Q |
840 |
gaacaacctttgcaact |
856 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
6497568 |
gaagaacctttgcaact |
6497584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 5589955 - 5590052
Alignment:
| Q |
12 |
agcagagacaagggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatgagtgtgt |
109 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5589955 |
agcacagaaaagggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatgagtgtgt |
5590052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 867
Target Start/End: Complemental strand, 6823730 - 6823577
Alignment:
| Q |
715 |
taatttatgatcaacacaccttggcaaccttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttac-gccct |
813 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||| |||||| | |||||||||||||||||||||| | ||||| |
|
|
| T |
6823730 |
taattaatgatcaacacaccttggcaaccttcagatgttatgttttccgagggagagtgatagacggtgaacaacatcatactcttcaggtttcggccct |
6823631 |
T |
|
| Q |
814 |
tcatttttgggagctcaaatagtatggaacaacctttgcaactaacggttgacc |
867 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6823630 |
tcattgcagggatatcaaatattatggaacaacctttgcaactaaaggttgacc |
6823577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 543 - 707
Target Start/End: Complemental strand, 6677017 - 6676853
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| || ||||||| ||| |||||||||||| |||| || |||||||| |||| ||||| | ||| |||||||||||||| ||||| |||| |
|
|
| T |
6677017 |
ggttcatcatataaaagagataatgttgtcttctcaacaatgaatccatccccaaacacaacaataacctccaccttgttaccaggttcaagatttgatg |
6676918 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggtt |
707 |
Q |
| |
|
|||||||| |||||||| || |||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
6676917 |
ttatgctccgccaatcctcaatctcaaaggaggttagtgtatctcttttatagagttgaatggtt |
6676853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 362 - 483
Target Start/End: Complemental strand, 6652716 - 6652595
Alignment:
| Q |
362 |
atcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgct |
461 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||||||||||||||||||| ||||||||||||| || |||| |||||| || |||||| ||| || |
|
|
| T |
6652716 |
atcatcaccaggaacaacagcattcttatccactgcatgccagtgcttatcttcacttatatttttatcttgaattggaccgatagcattgtaatcttct |
6652617 |
T |
|
| Q |
462 |
ggcacatcaatattgtcaccac |
483 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
6652616 |
ggcacatcaatattatcaccac |
6652595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 548 - 673
Target Start/End: Complemental strand, 6759410 - 6759285
Alignment:
| Q |
548 |
atcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatg |
647 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||| ||||||||| || |||||||| |||||| | |||||||||||||||||||| || || |||| | |
|
|
| T |
6759410 |
atcatataagagagatactgcagtcttctcaacaatgaaaccctgccgaaaaacaaccataacctcgactttgttaccaggttctaggtttgacgttacg |
6759311 |
T |
|
| Q |
648 |
ctctgccaatccacatcctcaaatga |
673 |
Q |
| |
|
|||| |||||| ||||| ||||||| |
|
|
| T |
6759310 |
ctctcccaatcatcatccccaaatga |
6759285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 341 - 434
Target Start/End: Complemental strand, 6759635 - 6759542
Alignment:
| Q |
341 |
attcttatttgattccatgacatcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttga |
434 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||| | ||| || |||||||||||| |||||||| |||||||| |||||| |||| |
|
|
| T |
6759635 |
attcttatttgattctttggcatcgtcaccagaaacaatagaactcttatccactgcatgccaatgcttatcttcacttatgatttcatcttga |
6759542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 6741198 - 6741138
Alignment:
| Q |
42 |
gagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatg |
102 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6741198 |
gagtccacaaaatatctaataaacacataagtaaagagagaaactcaggatccaaaaaatg |
6741138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 6762732 - 6762634
Alignment:
| Q |
19 |
acaagggaaggaaagttggtgaggagtccacggaaaatctaataaaccca---taaacaaag-----agagaaactcaggatccaaaaaatgagtgtgt |
109 |
Q |
| |
|
||||||||||||| |||||| ||||||||| || ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6762732 |
acaagggaaggaagtatggtgaagagtccacgaaatatctaataaacacatactaaacaaagagagaagagaaactcaggatccaaaaaatgagtgtgt |
6762634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 6497129 - 6497209
Alignment:
| Q |
404 |
gtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacatcaatattgtcaccacc |
484 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | |||| |||||||| | |||||||||| ||||||||| |||||||| |
|
|
| T |
6497129 |
gtgcttatcttcacttatattttcatcttgctctcgaccagtaacattattctccgctggcatatcaatattatcaccacc |
6497209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 6530811 - 6530869
Alignment:
| Q |
395 |
tgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgt |
453 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| ||||||| |||| || ||||||| |
|
|
| T |
6530811 |
tgcatgcaagttcttatcttcacttatattttcatcttgaccaagaccagtgacattgt |
6530869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 6678440 - 6678498
Alignment:
| Q |
395 |
tgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgt |
453 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
6678440 |
tgcatgcaagtgcttatctgcacttatattttcatcttgaccaagactggtgacattgt |
6678498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 6759937 - 6759884
Alignment:
| Q |
22 |
agggaaggaaagttggtgaggagtccacggaaaatctaataaacccataaacaa |
75 |
Q |
| |
|
||||||||||| ||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
6759937 |
agggaaggaaatcgggtgaagagtccacgaaatatctaataaacccataaacaa |
6759884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 269 - 644
Target Start/End: Original strand, 16833 - 17207
Alignment:
| Q |
269 |
aataacatacttgtccactgcatcccagttcttcttattatcatgtacattttcgcaaccagaaacaacataattcttatttgattccatgacatcatca |
368 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
16833 |
aataacatctttgtccactgcatcccagttcttcttattatcatgtacatttttgcaaccagaaacaacttaattcttatttgattccatggaagcatca |
16932 |
T |
|
| Q |
369 |
ccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgctggcacat |
468 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || |||||| |||||||||||||||| |||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
16933 |
ccagaaacaatagcactctcattcactgcatgcc-gttcttatcttcacttatattttcatcttgaccagcaccagtagcattgttatccgctggcacat |
17031 |
T |
|
| Q |
469 |
caatattgtcaccaccataagcacatgcgttattatcttcctcaccatatacattaacatcctcttcttttatcggtttatcatacaagagagatattgt |
568 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||| | | ||||||||||||||||||||| |||| |
|
|
| T |
17032 |
caatattgtcacgaccataagcacatacattattatcttcctcacgatatacaataacatcctcttcttctgttggtttatcatacaagagagatgttgt |
17131 |
T |
|
| Q |
569 |
agtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgtt |
644 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
17132 |
agtcttctcaacaatgaatccctccccaaaaacaaccataatcttcaccttgttaccaggttctagatttgatgtt |
17207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 16616 - 16676
Alignment:
| Q |
42 |
gagtccacggaaaatctaataaacccataaacaaagagagaaactcaggatccaaaaaatg |
102 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16616 |
gagtccacaaaatatctaataaacacataagtaaagagagaaactcaggatccaaaaaatg |
16676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 550 - 867
Target Start/End: Original strand, 7022 - 7342
Alignment:
| Q |
550 |
catacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatgttatgct |
649 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
7022 |
catataagagagatactgtagtattctcaacatggaaaccctccccaaaaacaaccataaacttcactttgttaccaagttctagatttgatgttatgct |
7121 |
T |
|
| Q |
650 |
ctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggttctc--tgtgtaatttatgatcaacacaccttggcaaccttct |
747 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
7122 |
ctgccaatcctcatcatcaaatgagattagtgtatctcttttataaacctgaatggttctctttgtgtaatttatgattaacacaccttggaaaccttct |
7221 |
T |
|
| Q |
748 |
gatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcagg-ttacgcccttcatttttgggagctcaaatagtatggaacaac |
846 |
Q |
| |
|
||| ||||||| || ||||||||||||||||| | | | || |||||||||||||| ||| ||| ||| |||||| ||||||| ||||||||||| |
|
|
| T |
7222 |
gatattatgttttccgaggaagagtaatagacgatgaataatctcatactcttcaggtttagtggctttattattgggatatcaaatattatggaacaac |
7321 |
T |
|
| Q |
847 |
ctttgcaactaacggttgacc |
867 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
7322 |
ctttgcaactaaaggttgacc |
7342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 133; Significance: 1e-68; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 543 - 907
Target Start/End: Complemental strand, 8108 - 7741
Alignment:
| Q |
543 |
ggtttatcatacaagagagatattgtagtcttctcaacagtgaaaccctccccaaaaacaatcataacattcactttgttaccaggttctagattcgatg |
642 |
Q |
| |
|
|||| |||||| |||||||||| ||| || || || ||| |||| |||||| |||||||| |||||| | |||| ||||||||||||||||| | |||| |
|
|
| T |
8108 |
ggttcatcatataagagagatactgttgttttttctacattgaatccctccgcaaaaacagccataacctccactgtgttaccaggttctagacttgatg |
8009 |
T |
|
| Q |
643 |
ttatgctctgccaatccacatcctcaaatgaggttagtgtatctcttttataaacctgaatggtt--ctctgtgtaatttatgatcaacacaccttggca |
740 |
Q |
| |
|
||| | ||| ||| ||| |||||||||| |||| || ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
8008 |
ttaagttcttccagtcctcatcctcaaaggaggctaatgtatctcttttataggcctgaatggttgcctttgtgtaatttatgatcaacacaccttggca |
7909 |
T |
|
| Q |
741 |
accttctgatgttatgttctctgaggaagagtaatagacaacggacaacatcatactcttcaggttacg-cccttcatttttgggagctcaaatagtatg |
839 |
Q |
| |
|
|||||||| | |||| | |||| ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||| | |||| |
|
|
| T |
7908 |
tccttctgaagctatgctttctggggaagagtaatagacgacgaacaacatcatactcttcaggttacgccccttcattgttgggagatcaaacattatg |
7809 |
T |
|
| Q |
840 |
gaacaacctttgcaactaacggttgaccgattggaactgttgtcacaagtgagcaaaaatgaatccca |
907 |
Q |
| |
|
|||| |||||||||| | |||| || || ||| |||||||||| | ||||| |||||||||||| |
|
|
| T |
7808 |
caacagcctttgcaacggaaggtttgccaatcagaattgttgtcacaggggagcacaaatgaatccca |
7741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 362 - 483
Target Start/End: Complemental strand, 8319 - 8198
Alignment:
| Q |
362 |
atcatcaccagaaacaatagtattctcattcactgcatgccagtgcttatcatcacttatattttcattttgaccaggaccggtaacattgtcatccgct |
461 |
Q |
| |
|
||||||||||| ||||| || ||||| || ||||||||||||||||||||| ||||||||||||| || |||| |||||| || |||||| ||| || |
|
|
| T |
8319 |
atcatcaccaggaacaacagcattcttatccactgcatgccagtgcttatcttcacttatatttttatcttgaattggaccgatagcattgtaatcttct |
8220 |
T |
|
| Q |
462 |
ggcacatcaatattgtcaccac |
483 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
8219 |
ggcacatcaatattatcaccac |
8198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University