View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_60 (Length: 432)
Name: NF8986_low_60
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 26152733 - 26153148
Alignment:
| Q |
1 |
agcagcaatctacataaaaagagaccttaaagtatccgacgggaaaattgaggtcttattaggaattatcaacatctactctctcattggttcatgtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152733 |
agcagcaatctacataaaaagagaccttaaagtatccgacgggaaaattgaggtcttattaggaattatcaacatctactctctcattggttcatgtctt |
26152832 |
T |
|
| Q |
101 |
gccgggagaacctccgattggattggtcgtcgttacaccatcgtgtttgcgggggccattttcttcgtcggagccttactcatgggtttctcaccaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26152833 |
gccgggagaacctccgattggattggtcgtcgttacaccatcgtgtttgcaggggccattttctttgtcggagccttactcatgggtttctcaccaaact |
26152932 |
T |
|
| Q |
201 |
ataacttcctcatgtttggccgctttgtcgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctc |
300 |
Q |
| |
|
| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26152933 |
acaacttcctcatgtttggtcgttttgttgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctc |
26153032 |
T |
|
| Q |
301 |
tcgcggctttctcacttctttccctgaggttagtctcttctataaactatctgtattttttcaaagcacgtttattatggattataaaaagagtgacttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26153033 |
tcgcggctttctcacttctttccctgaggttaatctcttctataaactatatgtattttttcaaagcacgtttattatggattataaaaagagtgacttt |
26153132 |
T |
|
| Q |
401 |
catatttaataattta |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26153133 |
catatttaataattta |
26153148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 27318946 - 27319117
Alignment:
| Q |
158 |
attttcttcgtcggagccttactcatgggtttctcaccaaactataacttcctcatgtttggccgctttgtcgccggagttggcatcggctatgctctca |
257 |
Q |
| |
|
||||||||||||||||| |||| ||||| | || ||||||||| || ||||||||||| || || | || || |||||||| || | ||| || |
|
|
| T |
27318946 |
attttcttcgtcggagctgtacttatgggactttctccaaactatgcatttctcatgtttggtcgtttctttgctggtgttggcatagggtttgccttct |
27319045 |
T |
|
| Q |
258 |
tgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggctttctcacttctttccctgagg |
329 |
Q |
| |
|
||||||| || || |||||| ||||||||||||| |||| ||||| ||||| |||||||| || ||||||| |
|
|
| T |
27319046 |
tgattgctcctgtttatacctctgaagtctccccaacttcatctcgtggcttcctcacttccttgcctgagg |
27319117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 330
Target Start/End: Original strand, 54348138 - 54348360
Alignment:
| Q |
108 |
gaacctccgattggattggtcgtcgttacaccatcgtgtttgcgggggccattttcttcgtcggagccttactcatgggtttctcaccaaactataactt |
207 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||| |||| || |||| ||||||| || || | |||||||| ||||| || |||| | ||| |
|
|
| T |
54348138 |
gaacctctgactggattggtcgccgttacaccatcgtccttgctggctccatcttcttcgcaggcgcactcctcatgggattctctcccaactttgcctt |
54348237 |
T |
|
| Q |
208 |
cctcatgtttggccgctttgtcgccggagttggcatcggctatgctctcatgattgccccggtctataccgctgaagtctcccccgcttcctctcgcggc |
307 |
Q |
| |
|
|||||||||| || || | || || | || |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
54348238 |
tctcatgtttgctcgtttcattgctggtatcggtatcggctacgctctcatgatcgccccggtctacaccgccgaagtctcccctgcttcctctcgcggc |
54348337 |
T |
|
| Q |
308 |
tttctcacttctttccctgaggt |
330 |
Q |
| |
|
|| ||||| || ||||| ||||| |
|
|
| T |
54348338 |
ttcctcacctccttccccgaggt |
54348360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University