View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_64 (Length: 416)
Name: NF8986_low_64
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_64 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 23890 - 24272
Alignment:
| Q |
19 |
gactcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23890 |
gactcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttcgatctttaacaaaacacttctcaacaa |
23989 |
T |
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| Q |
119 |
aatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatccgaagcaacaacgaccacatatttgaatctttctccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23990 |
aatcttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaa |
24089 |
T |
|
| Q |
219 |
attccatgctggttttcccgttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattcgggt |
318 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24090 |
attccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattccggc |
24189 |
T |
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| Q |
319 |
gacataaaaagtggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgat |
401 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24190 |
gacataaaaagcggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgat |
24272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 14473 - 14852
Alignment:
| Q |
22 |
tcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaat |
121 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
14473 |
tcattaacattaatcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctttttcttggatctttcacaaaacacttctcaacaaaat |
14572 |
T |
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| Q |
122 |
cttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatccgaagcaacaacgaccacatatttgaatctttctccaaatt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14573 |
cttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatctgaagcaacaacgaccacatatttgaatctttctccaaatt |
14672 |
T |
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| Q |
222 |
ccatgctggttttcccgttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattcgggtgac |
321 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
14673 |
ccaagctggttttccagttaccatctccaccactgcacacccaagtgcccaaatatccgcgggagattcatgctcgccattgtttactgattccggcgac |
14772 |
T |
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| Q |
322 |
ataaaaagtggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgat |
401 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773 |
ataaaaagcggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgat |
14852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 863 - 484
Alignment:
| Q |
22 |
tcatcaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaat |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
863 |
tcattaacattcttcacttcttcaacaaaaggatgattcaaaagcatctcagccgtccatctttttcttggatctttcacaaaacacttctcaacaaaat |
764 |
T |
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| Q |
122 |
cttttccttctttcgataattcttcgggtatcaacggcgattcttctccggcaccaatccgaagcaacaacgaccacatatttgaatctttctccaaatt |
221 |
Q |
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||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
763 |
cttttccttcttttgacaattcttcgggtatcaccggcgattcttctccggtaccaatccgaagcaacaatgaccacatatttgaatctttctccaaatt |
664 |
T |
|
| Q |
222 |
ccatgctggttttcccgttaccatctccaccactgcacacccaagtgcccaaatatccgccggagattcatgctcgccattgtttactgattcgggtgac |
321 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||| || ||| |
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| T |
663 |
ccatgctggttttccagttaccatctccaccaccgcacacccaagtgcccatatatccgccggagattcatgctcaccgtggtttactgattccggcgac |
564 |
T |
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| Q |
322 |
ataaaaagtggggttcctctgcattcaaaactctgtttttcccctgttttcttggcaagaccaaaatcagcaattttgat |
401 |
Q |
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||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
563 |
ataaaaagtggagttcccctgcatttcaaactctgttttccccctgttttcttggcaagaccaaaatcagcaattttgat |
484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 6221768 - 6221917
Alignment:
| Q |
58 |
ttcaaaagcatctcagccgtccatctctttcttggatctttaacaaaacacttctcaacaaaatcttttccttctttcgataattcttcgggtatcaacg |
157 |
Q |
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|||||||||||||| ||||||||||| ||| ||||| || | |||||||| || | |||||||||||| ||| |||||||| || || ||||||| |
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| T |
6221768 |
ttcaaaagcatctctgccgtccatctttttgaaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacg |
6221867 |
T |
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| Q |
158 |
gcgattcttctccggcaccaatccgaagcaacaacgaccacatatttgaa |
207 |
Q |
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| T |
6221868 |
gtgattcgtcttctgccccaattcgaattaacaacgaccacatatttgaa |
6221917 |
T |
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