View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_72 (Length: 368)
Name: NF8986_low_72
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 41598258 - 41598602
Alignment:
| Q |
16 |
gaaccaccacaaaggaagtgcggagactcaaccaacctgtgcaatgacaagacatgcttttcatgcaacagcattagagaagcgaattcacagattgtga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41598258 |
gaaccaccacaaaggaagtgcggagactcaaccaacctgtgcaatgacaagacatgcttttcatgcaacagcattagagaagcaaattcacagattgtga |
41598357 |
T |
|
| Q |
116 |
gaggaacacttctggtaatggttactttgacaaatgttaaattaacagcattagccctctattttttaataactttcacaaatgttctctcatatacaga |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41598358 |
gaggaacacttctggtaatgattactttgacaaatgttaaattaacagcattagccctctattttttaataactttcacaaatgttctctcatatacaga |
41598457 |
T |
|
| Q |
216 |
taccgtgtcgaacagcagcaaggggaagttttccgctgaatggaacttactttcaagttaatgaggtaagtgtaatctagttttggtactgttccagtca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41598458 |
taccgtgtcgaacagcagcaaggggaagttttccgctgaatggaacttactttcaagttaatgaggtaagtgtaatctagttttggtactgttccagtca |
41598557 |
T |
|
| Q |
316 |
ccttaacaaaatgaccttatattaaattttcaatactcaccaccaa |
361 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
41598558 |
ccttaacaaaattaccttatattaaa-tttcaatactcaccaccaa |
41598602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 41922177 - 41922216
Alignment:
| Q |
243 |
gttttccgctgaatggaacttactttcaagttaatgaggt |
282 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
41922177 |
gttttcctctgaatggaacatactttcaagttaatgaggt |
41922216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 36001383 - 36001415
Alignment:
| Q |
252 |
tgaatggaacttactttcaagttaatgaggtaa |
284 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
36001383 |
tgaatggaacatactttcaagttaatgaggtaa |
36001415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University