View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_75 (Length: 349)

Name: NF8986_low_75
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_75
NF8986_low_75
[»] chr4 (22 HSPs)
chr4 (16-333)||(39508818-39509135)
chr4 (16-81)||(19238588-19238653)
chr4 (16-81)||(37109362-37109427)
chr4 (17-81)||(9241037-9241101)
chr4 (16-60)||(38869789-38869833)
chr4 (16-82)||(55427211-55427277)
chr4 (16-81)||(21660155-21660220)
chr4 (16-81)||(21668919-21668984)
chr4 (16-81)||(31759669-31759734)
chr4 (24-81)||(51250541-51250598)
chr4 (16-60)||(17618302-17618346)
chr4 (17-81)||(28635696-28635760)
chr4 (16-60)||(30938230-30938274)
chr4 (24-78)||(7292817-7292871)
chr4 (16-54)||(23377983-23378021)
chr4 (16-78)||(41346974-41347036)
chr4 (16-77)||(13901746-13901807)
chr4 (16-81)||(24827825-24827890)
chr4 (32-81)||(27965537-27965586)
chr4 (17-54)||(37274471-37274508)
chr4 (16-81)||(47044717-47044782)
chr4 (16-60)||(13015448-13015492)
[»] scaffold0258 (1 HSPs)
scaffold0258 (16-82)||(15334-15400)
[»] chr6 (11 HSPs)
chr6 (16-81)||(33549104-33549169)
chr6 (16-81)||(30127400-30127465)
chr6 (16-81)||(31623002-31623067)
chr6 (19-81)||(12188317-12188379)
chr6 (16-77)||(6776618-6776679)
chr6 (19-60)||(24641204-24641245)
chr6 (16-54)||(34786465-34786503)
chr6 (24-81)||(14557962-14558019)
chr6 (16-60)||(6758433-6758477)
chr6 (16-60)||(10338185-10338229)
chr6 (16-60)||(28363958-28364002)
[»] chr5 (20 HSPs)
chr5 (16-81)||(29075781-29075846)
chr5 (16-81)||(8278286-8278351)
chr5 (16-81)||(14495816-14495881)
chr5 (16-81)||(30883209-30883274)
chr5 (16-81)||(16773807-16773872)
chr5 (16-56)||(84849-84889)
chr5 (17-81)||(34984806-34984870)
chr5 (16-74)||(1410670-1410728)
chr5 (25-82)||(21549157-21549214)
chr5 (24-81)||(29692405-29692462)
chr5 (16-50)||(4793099-4793133)
chr5 (16-50)||(12883871-12883905)
chr5 (16-81)||(87434-87499)
chr5 (16-81)||(16457810-16457875)
chr5 (16-81)||(21589288-21589353)
chr5 (16-81)||(25627057-25627122)
chr5 (16-81)||(30109319-30109384)
chr5 (25-53)||(17761375-17761403)
chr5 (16-52)||(22020873-22020909)
chr5 (16-60)||(43442217-43442261)
[»] chr3 (34 HSPs)
chr3 (19-81)||(36720381-36720443)
chr3 (17-81)||(31520617-31520681)
chr3 (19-83)||(31788984-31789048)
chr3 (16-74)||(4844522-4844580)
chr3 (16-74)||(4870218-4870276)
chr3 (16-54)||(44743866-44743904)
chr3 (16-60)||(2667883-2667927)
chr3 (16-80)||(47454628-47454692)
chr3 (16-60)||(51903889-51903933)
chr3 (16-54)||(10445150-10445188)
chr3 (16-54)||(31608535-31608573)
chr3 (19-81)||(46518628-46518690)
chr3 (16-81)||(2597231-2597296)
chr3 (24-81)||(4222141-4222198)
chr3 (16-81)||(10499120-10499185)
chr3 (17-54)||(11090177-11090214)
chr3 (16-81)||(15048072-15048137)
chr3 (17-54)||(28531070-28531107)
chr3 (16-53)||(30311334-30311371)
chr3 (17-53)||(7975446-7975482)
chr3 (16-60)||(21960572-21960616)
chr3 (19-54)||(27259188-27259223)
chr3 (16-54)||(9557347-9557385)
chr3 (16-78)||(53412948-53413010)
chr3 (16-81)||(8051214-8051279)
chr3 (24-81)||(26481927-26481984)
chr3 (16-81)||(27093372-27093437)
chr3 (16-81)||(28703415-28703480)
chr3 (25-61)||(13613459-13613495)
chr3 (24-60)||(14339631-14339667)
chr3 (24-60)||(28928898-28928934)
chr3 (24-60)||(32651457-32651493)
chr3 (16-52)||(47279415-47279451)
chr3 (16-48)||(52769994-52770026)
[»] chr2 (25 HSPs)
chr2 (16-82)||(19016030-19016096)
chr2 (16-81)||(42327406-42327471)
chr2 (17-80)||(16918590-16918653)
chr2 (16-81)||(26545840-26545905)
chr2 (16-81)||(29503271-29503336)
chr2 (16-81)||(37480075-37480140)
chr2 (16-81)||(39714992-39715057)
chr2 (17-81)||(1729816-1729880)
chr2 (17-81)||(42602554-42602618)
chr2 (14-81)||(3697409-3697475)
chr2 (18-81)||(4438992-4439055)
chr2 (14-81)||(19322768-19322835)
chr2 (16-82)||(19244108-19244174)
chr2 (16-50)||(25637182-25637216)
chr2 (16-78)||(33962795-33962857)
chr2 (16-81)||(5147690-5147755)
chr2 (16-81)||(7799046-7799111)
chr2 (16-73)||(21213777-21213834)
chr2 (16-81)||(28846691-28846756)
chr2 (16-81)||(34041599-34041664)
chr2 (24-81)||(42922414-42922471)
chr2 (16-88)||(1435057-1435129)
chr2 (16-60)||(12086140-12086184)
chr2 (16-52)||(14500306-14500342)
chr2 (16-60)||(37755982-37756026)
[»] chr8 (26 HSPs)
chr8 (16-81)||(16852340-16852405)
chr8 (16-81)||(968362-968427)
chr8 (16-79)||(2203494-2203557)
chr8 (16-78)||(36205198-36205260)
chr8 (16-81)||(5264544-5264609)
chr8 (16-81)||(19703498-19703563)
chr8 (16-81)||(35641912-35641977)
chr8 (16-60)||(7140730-7140774)
chr8 (16-60)||(29858060-29858104)
chr8 (16-79)||(3624582-3624645)
chr8 (17-59)||(11492085-11492127)
chr8 (16-82)||(26688864-26688930)
chr8 (24-82)||(30483903-30483961)
chr8 (16-81)||(4830487-4830552)
chr8 (25-54)||(6569791-6569820)
chr8 (16-81)||(18540298-18540363)
chr8 (16-81)||(23361660-23361725)
chr8 (16-81)||(23874393-23874458)
chr8 (16-81)||(28783060-28783125)
chr8 (16-81)||(44780125-44780190)
chr8 (16-60)||(6536541-6536585)
chr8 (17-81)||(11793533-11793597)
chr8 (16-60)||(12281515-12281559)
chr8 (26-82)||(20994479-20994535)
chr8 (16-60)||(30774747-30774791)
chr8 (16-60)||(35690075-35690119)
[»] chr7 (26 HSPs)
chr7 (16-81)||(2446308-2446373)
chr7 (16-83)||(25590609-25590676)
chr7 (16-82)||(20335842-20335908)
chr7 (16-81)||(17041023-17041088)
chr7 (16-81)||(22760863-22760928)
chr7 (16-81)||(26459421-26459486)
chr7 (16-81)||(43215184-43215249)
chr7 (16-81)||(48771938-48772003)
chr7 (24-79)||(21854550-21854605)
chr7 (16-54)||(26703152-26703190)
chr7 (15-61)||(28236591-28236637)
chr7 (24-81)||(25021354-25021411)
chr7 (16-81)||(45709719-45709784)
chr7 (19-54)||(5934148-5934183)
chr7 (16-82)||(23301613-23301679)
chr7 (16-61)||(5668582-5668627)
chr7 (16-53)||(9871297-9871334)
chr7 (16-81)||(15137553-15137618)
chr7 (16-81)||(18363696-18363761)
chr7 (16-81)||(23552118-23552183)
chr7 (16-53)||(29785312-29785349)
chr7 (20-57)||(34898478-34898515)
chr7 (19-60)||(37085563-37085604)
chr7 (16-81)||(39631844-39631909)
chr7 (24-81)||(42836020-42836077)
chr7 (17-81)||(30442488-30442552)
[»] scaffold0299 (1 HSPs)
scaffold0299 (16-60)||(11549-11593)
[»] chr1 (34 HSPs)
chr1 (16-78)||(15786331-15786393)
chr1 (19-77)||(24047116-24047174)
chr1 (16-81)||(40257399-40257464)
chr1 (16-81)||(41508831-41508896)
chr1 (16-81)||(45235390-45235455)
chr1 (17-81)||(25297772-25297836)
chr1 (16-79)||(33700784-33700847)
chr1 (16-82)||(19528338-19528404)
chr1 (16-81)||(50901581-50901647)
chr1 (19-60)||(8177196-8177237)
chr1 (24-81)||(9165214-9165271)
chr1 (17-78)||(26232398-26232459)
chr1 (19-60)||(44046162-44046203)
chr1 (24-81)||(51703779-51703836)
chr1 (16-81)||(51814494-51814559)
chr1 (16-52)||(12370192-12370228)
chr1 (17-80)||(18459243-18459307)
chr1 (17-81)||(31794276-31794340)
chr1 (17-81)||(36371470-36371534)
chr1 (16-51)||(12587300-12587335)
chr1 (16-47)||(17439951-17439982)
chr1 (25-60)||(52336794-52336829)
chr1 (16-53)||(2799890-2799927)
chr1 (16-77)||(4824975-4825036)
chr1 (16-53)||(9117147-9117184)
chr1 (16-81)||(10526823-10526888)
chr1 (16-81)||(16893394-16893459)
chr1 (16-77)||(17745267-17745328)
chr1 (16-60)||(9643820-9643864)
chr1 (16-60)||(17410252-17410296)
chr1 (16-60)||(25494080-25494124)
chr1 (16-60)||(31383809-31383853)
chr1 (16-80)||(44126396-44126460)
chr1 (29-81)||(46146291-46146343)
[»] scaffold0021 (1 HSPs)
scaffold0021 (18-60)||(157000-157042)
[»] scaffold0118 (1 HSPs)
scaffold0118 (16-81)||(41644-41709)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-61)||(19858-19903)
[»] scaffold1367 (1 HSPs)
scaffold1367 (16-60)||(851-895)
[»] scaffold0194 (1 HSPs)
scaffold0194 (16-60)||(13057-13101)
[»] scaffold0086 (1 HSPs)
scaffold0086 (24-82)||(47381-47439)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-78)||(94982-95044)
[»] scaffold0291 (1 HSPs)
scaffold0291 (16-81)||(2481-2546)
[»] scaffold0047 (1 HSPs)
scaffold0047 (24-81)||(14990-15047)
[»] scaffold0417 (1 HSPs)
scaffold0417 (17-81)||(10219-10283)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 39509135 - 39508818
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttggctcacttatctgttttgtccttgtttccttat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  39509135 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagaccaacccaagtgggttggctcacttatctgttttgtccttgtttccttgt 39509036  T
Q  116 atttttacatccttagttactatcgttgctggtctattctaaattgtaaaattattattgatgatgatgctgtatatttctgatgcttgaaataaattgt 215  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39509035 atttttacatccttagttattatcgttgctggtctattctaaattgtaaaattattattgatgatgatgctgtatatttttgatgcttgaaataaattgt 39508936  T
Q  216 tggtaattatgtgcatcatatacagcagttgtttgagtgcttgcaccaatgcatatattccacaggggccaacaatggtataacctagtatatgattcag 315  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  39508935 tggtaattatgtgcattatatacagcagttgtttgagtgcttgcaccaatgcatatatcccacaggggccaacaatggtataacctagtacatgattcag 39508836  T
Q  316 tattgttcaccttatatg 333  Q
    |||| |||||||||||||    
T  39508835 tattcttcaccttatatg 39508818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19238588 - 19238653
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||  |||||||||| |||||  || | ||||||||||||||    
T  19238588 gagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 37109362 - 37109427
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  37109362 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9241037 - 9241101
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||  || | ||||||||||||||    
T  9241037 agacctcgagcaggagcacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 38869833 - 38869789
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  38869833 gagaccttgaggaggagcacactcccagatcccaagccaatacca 38869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 55427211 - 55427277
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||||||| ||||||| |||||||| |||||||||| |||||  || | |||||||||||||||    
T  55427211 gagacctcgagcaggagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggttg 55427277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 21660155 - 21660220
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||| ||||||||||||||||| |||| || |||||  |||| ||||||||| ||||    
T  21660155 gagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 21668919 - 21668984
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||| ||||||||||||||||| |||| || |||||  |||| ||||||||| ||||    
T  21668919 gagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggtt 21668984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31759669 - 31759734
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||  |||||||||| |||||  |||  ||||||||||||||    
T  31759669 gagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 51250541 - 51250598
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| |||||||||||||||||||||||||| |||||  || | ||||||||||||||    
T  51250541 gaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17618346 - 17618302
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||||||||||||||| || ||||||| |||||    
T  17618346 gagacctcgaggaggagcacactcccaggtctcaagccaatacca 17618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 28635760 - 28635696
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||||||||||||| || |||||  ||   ||||||||||||||    
T  28635760 agacctccaggaggagcacactcccagatcccaagtcagtaccaccaggacaacccaagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 30938230 - 30938274
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||    
T  30938230 gagacctcgaggaggagcacactccaagatcccaaaccaatacca 30938274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 7292817 - 7292871
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    |||||||||||||||||||| | |||||||| |||||  |||| |||||||||||    
T  7292817 gaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 23378021 - 23377983
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  23378021 gagaccttgaggaggagcacactcccaggtcccaagcca 23377983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 41346974 - 41347036
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||| ||||||||||||| ||||||||||| ||| ||| |||||| || | |||||||||||    
T  41346974 gagacttcgaggaggagcatactcccagatctcaaaccaataccatcaggccaacccaagtgg 41347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13901807 - 13901746
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtg 77  Q
    |||||||| ||||||| ||||||||||| || ||||||| |||||  |||| ||||||||||    
T  13901807 gagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 24827890 - 24827825
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||| ||||||||| ||||||| || |||||   ||| |||| |||||||||    
T  24827890 gagacctcgaggaggagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 27965537 - 27965586
Alignment:
Q  32 gcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||||| |||||  || | ||||||||||||||    
T  27965537 gcacactcccagatcccaagccaataccactaggccaacccaagtgggtt 27965586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37274471 - 37274508
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  37274471 agaccttgaggaggagcacactcccaggtcccaagcca 37274508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 47044782 - 47044717
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||| |||| ||||||||||| || |||||  || | || |||||||||||    
T  47044782 gagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 13015492 - 13015448
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||| |||||||||||||||||||||  |||||||||| |||||    
T  13015492 gagacttcgaggaggagcacactcccaagtcccaagccaatacca 13015448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 15334 - 15400
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  |||| |||||||||||||||    
T  15334 gagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttg 15400  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 33549169 - 33549104
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  |||| ||||||||||||||    
T  33549169 gagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 30127465 - 30127400
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||  |||| ||||||||||||||    
T  30127465 gagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31623002 - 31623067
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| |||||||||| |||||   ||| ||||||||||||||    
T  31623002 gagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12188317 - 12188379
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  12188317 accttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 6776618 - 6776679
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtg 77  Q
    ||||| |||||||||||||||| |||||||||||||||| |||||  || | ||||||||||    
T  6776618 gagacatcgaggaggagcacacccccagatcccaagccaataccaccaggccaacccaagtg 6776679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 24641204 - 24641245
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  24641204 acctcgaggaggagcacactcccagatcccaagtcaatacca 24641245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 34786465 - 34786503
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  34786465 gagacttcgagaaggagcacactcccagatcccaagcca 34786503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 14558019 - 14557962
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||| |||| ||||||||||  ||||  |||| ||||||||||||||    
T  14558019 gaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 6758433 - 6758477
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||| |||||||||||||| |||| |||||| |||||    
T  6758433 gagacctcgaggtggagcacactcccaaatcctaagccaatacca 6758477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 10338185 - 10338229
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||||| || |||||||||| |||||    
T  10338185 gagaccttgaggaggagcacactcctaggtcccaagccaatacca 10338229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 28364002 - 28363958
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| |||||||||||||||| |||||||||| ||| |||||    
T  28364002 gagaccttgaggaggagcacactcgcagatcccaaaccaatacca 28363958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29075846 - 29075781
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| |||||||||||||||||||||||||||||||||| |||||  || ||||||||||||||||    
T  29075846 gagatctcgaggaggagcacactcccagatcccaagccaataccactaggcaaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 8278286 - 8278351
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||||||||||||||||  |||||||||| |||||| |||| ||||||||||||||    
T  8278286 gagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14495816 - 14495881
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||||||||||| || |||||  |||| ||||||| ||||||    
T  14495816 gagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 30883209 - 30883274
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||  |||| ||||||||||||||    
T  30883209 gagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16773872 - 16773807
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| ||||||| || |||||  |||| ||| ||||||||||    
T  16773872 gagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 84889 - 84849
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccatt 56  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  84889 gagaccttgaggaggagcacactcccagatcccaagccatt 84849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 34984870 - 34984806
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| |||||||||||||||||||| | |||||||| |||||  |||| ||||||||||||||    
T  34984870 agaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 1410670 - 1410728
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaa 74  Q
    ||||||||||||||||||||||||||| |||||||| || |||||  |||| |||||||    
T  1410670 gagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 21549157 - 21549214
Alignment:
Q  25 aggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||||||||||||||| |||||||||| |||||  || | |||||||||||||||    
T  21549157 aggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttg 21549214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 29692405 - 29692462
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||||||||| ||| |||||  |||| ||||||| ||||||    
T  29692405 gaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtt 29692462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 4793099 - 4793133
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaa 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  4793099 gagacctcgaggaggagcacactcccaggtcccaa 4793133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 12883905 - 12883871
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaa 50  Q
    |||||||| ||||||||||||||||||||||||||    
T  12883905 gagacctcaaggaggagcacactcccagatcccaa 12883871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 87434 - 87499
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||||| ||||| || |||||  || | |||| |||||||||    
T  87434 gagaccttgaggaggagcacactcccagattccaaggcaataccactaggccaaccgaagtgggtt 87499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16457875 - 16457810
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||| || |||||||||| |||||  || | |||| |||||||||    
T  16457875 gagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggtt 16457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 21589353 - 21589288
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||| |||||||| |||| |||||||| |||||||||| |||||  || | ||||||||||||||    
T  21589353 gagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 25627122 - 25627057
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||  | |||||||| |||||  || | ||||||||||||||    
T  25627122 gagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 30109319 - 30109384
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||| ||||||||||||||||||| || ||||||| |||||  |  | ||||||||||||||    
T  30109319 gagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtt 30109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 17761375 - 17761403
Alignment:
Q  25 aggaggagcacactcccagatcccaagcc 53  Q
    |||||||||||||||||||||||||||||    
T  17761375 aggaggagcacactcccagatcccaagcc 17761403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 22020873 - 22020909
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagc 52  Q
    ||||| || ||||||||||||||||||||||||||||    
T  22020873 gagacttcaaggaggagcacactcccagatcccaagc 22020909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 43442261 - 43442217
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||||||||||| ||| ||| |||||    
T  43442261 gagaccttgaggaggagcacactcccagatctcaaaccaatacca 43442217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 36720443 - 36720381
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||| ||||||||||| |||||  |||| ||||||||||||||    
T  36720443 acctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 31520617 - 31520681
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||||||||||||| | |||  || | ||||||||||||||    
T  31520617 agacctcgaggaggagcacactcccagatcccaagccaatgccaccaggccaacccaagtgggtt 31520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 31788984 - 31789048
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttgg 83  Q
    |||||||||||||||||||||||||||||||||||| || ||  || | ||||||||||||||||    
T  31788984 acctcgaggaggagcacactcccagatcccaagccaataacactaggccaacccaagtgggttgg 31789048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4844522 - 4844580
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaa 74  Q
    |||||||||||||||||||||||||||||||||||| || |||||  |||| |||||||    
T  4844522 gagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4870218 - 4870276
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaa 74  Q
    |||||||||||||||||||||||||||||||||||| || |||||  |||| |||||||    
T  4870218 gagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4870276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 44743866 - 44743904
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44743866 gagacctcgaggaggagcacactcccagatcccaagcca 44743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 2667927 - 2667883
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  2667927 gagacctcgaggaagagcacactcccagatcccaagccaatacca 2667883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 47454628 - 47454692
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggt 80  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||  |||  |||||||||||||    
T  47454628 gagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 51903889 - 51903933
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  51903889 gagaccacgaggaggagcacactcccagatcccaagccaatacca 51903933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 10445150 - 10445188
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  10445150 gagacctcgaggaggagcacactcccaggtcccaagcca 10445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 31608535 - 31608573
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  31608535 gagacctcgaggaggagcacactcccagatctcaagcca 31608573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 46518690 - 46518628
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||||||||||||||||||||||||| |||||  |  | ||||||||||||||    
T  46518690 accttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggtt 46518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 2597231 - 2597296
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||| |||||||||||||||| | |||| |||||| |||||  |||| ||||||||||||||    
T  2597231 gagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4222198 - 4222141
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||||||||||||| |||||  |  | ||||||||||||||    
T  4222198 gaggaggagcacactcccagatcccaagccaataccactaagccaacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10499120 - 10499185
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||| |||| ||||| ||||||||||||||||||| |||||  || | ||||||||||||||    
T  10499120 gagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 11090177 - 11090214
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11090177 agacctcgaggaggagcacattcccagatcccaagcca 11090214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 15048072 - 15048137
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||| ||||||||||||||||  |||||| |  | ||||||||||||||    
T  15048072 gagaccttgaggaggagcacattcccagatcccaagcctataccattaagccaacccaagtgggtt 15048137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 28531070 - 28531107
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28531070 agacctcgaggaggagcatactcccagatcccaagcca 28531107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 30311371 - 30311334
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc 53  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30311371 gagaccttgaggaggagcacactcccagatcccaagcc 30311334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 7975482 - 7975446
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagcc 53  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7975482 agaccttgaggaggagcacactcccagatcccaagcc 7975446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 21960616 - 21960572
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||    
T  21960616 gagacctcgaggaggagcacactctcaggtcccaagccaatacca 21960572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 27259223 - 27259188
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27259223 acctcgaggaggagcacactcccaggtcccaagcca 27259188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 9557385 - 9557347
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  9557385 gagatctcgaggaggagcacactctcagatcccaagcca 9557347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 53413010 - 53412948
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||||| |||||||||||||||||||| |  ||||||| |||||  |||| |||||||||||    
T  53413010 gagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 8051279 - 8051214
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||| |||| ||| |||| |||||||||| |||||  || | ||||||||||||||    
T  8051279 gagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 26481984 - 26481927
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||| ||| ||||||||||||||||  |  | ||||||||||||||    
T  26481984 gaggaggagcacactctcaggtcccaagccattaccaccaagctaacccaagtgggtt 26481927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 27093372 - 27093437
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||  | |||||||| |||||  || | ||||||||||||||    
T  27093372 gagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 28703415 - 28703480
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| || |||||||||||||||||||||||||| | || ||   ||| ||||||||||||||    
T  28703415 gagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13613459 - 13613495
Alignment:
Q  25 aggaggagcacactcccagatcccaagccattaccat 61  Q
    |||||||||||||| |||| |||||||||||||||||    
T  13613459 aggaggagcacacttccaggtcccaagccattaccat 13613495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 14339667 - 14339631
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  14339667 gaggaggagcacactcccaaatcccaagccaatacca 14339631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 28928898 - 28928934
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||| |||||||||||||| |||||    
T  28928898 gaggaggagcacactctcagatcccaagccaatacca 28928934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 32651457 - 32651493
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||||||| |||||||||| |||||    
T  32651457 gaggaggagcacactcccaggtcccaagccaatacca 32651493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 47279415 - 47279451
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagc 52  Q
    |||||||  ||||||||||||||||||||||||||||    
T  47279415 gagaccttaaggaggagcacactcccagatcccaagc 47279451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 52769994 - 52770026
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatccc 48  Q
    |||||||| ||||||||||||||||||||||||    
T  52769994 gagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 19016096 - 19016030
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||||||||||||||||||||||  || ||||||| |||||| |||| |||||||||||||||    
T  19016096 gagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggttg 19016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 42327406 - 42327471
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  42327406 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 16918590 - 16918653
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggt 80  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||  || | |||||||||||||    
T  16918590 agaccttgaggaggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 26545905 - 26545840
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||| ||||||||||| ||||||||||||| | |||||  | || ||||||||||||||    
T  26545905 gagacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggtt 26545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29503336 - 29503271
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| |||||| ||| |||||  || | ||||||||||||||    
T  29503336 gagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 37480140 - 37480075
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||||  || | ||||||||||||||    
T  37480140 gagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39715057 - 39714992
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| ||||||| || |||||  |  | ||||||||||||||    
T  39715057 gagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 1729880 - 1729816
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| |||||||||||||||||||  |||||||||| |||||  || | ||||||||||||||    
T  1729880 agacctagaggaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggtt 1729816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 42602618 - 42602554
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| ||| |||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  42602618 agaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 3697409 - 3697475
Alignment:
Q  14 cagagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||| ||| |||||||| |||| || |||||||||| |||||| |||| ||||||||||||||    
T  3697409 cagagaccttgag-aggagcactctccaaggtcccaagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4438992 - 4439055
Alignment:
Q  18 gacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||| |||||||||||||||| |||||||||||  | |||||| || | ||||||||||||||    
T  4438992 gaccttgaggaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtt 4439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 19322835 - 19322768
Alignment:
Q  14 cagagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||| || ||||||||||||||||| |||||| ||| |||||  |||  ||||||||||||||    
T  19322835 cagagaccttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggtt 19322768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 19244174 - 19244108
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||| | |||||||||||||| ||| ||||||| || |||||  |||| |||||||||||||||    
T  19244174 gagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggttg 19244108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 25637216 - 25637182
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaa 50  Q
    ||||||||||| |||||||||||||||||||||||    
T  25637216 gagacctcgagaaggagcacactcccagatcccaa 25637182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 33962795 - 33962857
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    |||| ||||||||||||||||||||||| |||||| ||| || ||| || | |||||||||||    
T  33962795 gagatctcgaggaggagcacactcccagttcccaaaccaatatcattaggccaacccaagtgg 33962857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 5147690 - 5147755
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||| ||||||| ||||||||||| |||| || |||||  |||| ||||||||||||||    
T  5147690 gagaccttgagaaggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 7799046 - 7799111
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||||||||||||||||  |||||||||| |||||  ||   ||||||||||||||    
T  7799046 gagatctcgaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggtt 7799111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 21213834 - 21213777
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaaccca 73  Q
    |||||||| ||||||| ||||||||||| |||||||||| |||||  |||| ||||||    
T  21213834 gagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaaccca 21213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28846756 - 28846691
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||| |||||||||||||||||||||| ||||||| || |||||  |||  |||| |||||||||    
T  28846756 gagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 34041599 - 34041664
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||| ||||||| ||| || |||||  || | ||||||||||||||    
T  34041599 gagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggtt 34041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 42922471 - 42922414
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||| | |||||||| |||||  || | ||||||||||||||    
T  42922471 gaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 42922414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 1435129 - 1435057
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttggctcac 88  Q
    ||||||| |||||| |||||||||| | ||||||||||| |||||  |  | |||||||||||||||| ||||    
T  1435129 gagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgccaacccaagtgggttggttcac 1435057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 12086140 - 12086184
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||| |||| |||||||||| |||||    
T  12086140 gagaccttgaggaggagcacacttccaggtcccaagccaatacca 12086184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 14500342 - 14500306
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagc 52  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  14500342 gagacctagaggaggagcacactcccagatctcaagc 14500306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 37755982 - 37756026
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||| ||||||||| |||||| |||||||||| |||||    
T  37755982 gagacctcgagtaggagcacattcccaggtcccaagccaatacca 37756026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16852405 - 16852340
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  16852405 gagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 968427 - 968362
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| |||||||||| |||||  || | ||| ||||||||||    
T  968427 gagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 2203557 - 2203494
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtggg 79  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||    
T  2203557 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 36205260 - 36205198
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||||| ||||||||||||||||||||||| ||| ||| || ||| |||| |||||||||||    
T  36205260 gagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagtgg 36205198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 5264609 - 5264544
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||| |||||| | |||||||| |||||  || | ||||||||||||||    
T  5264609 gagacctcgaggaggagcacattcccaggttccaagccaataccactaggccaacccaagtgggtt 5264544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19703498 - 19703563
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||| ||| |||||||||| |||||  || | ||||||||||||||    
T  19703498 gagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggtt 19703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35641912 - 35641977
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||| ||||||||||||||||||||| ||| ||||||  |||||  |||| ||||||||||||||    
T  35641912 gagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggtt 35641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 7140774 - 7140730
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||    
T  7140774 gagagctcgaggaggagcacacacccagatcccaagccaatacca 7140730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 29858060 - 29858104
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||||||||||||| | |||||||||| |||||    
T  29858060 gagacctcgaggaggagcacactccctggtcccaagccaatacca 29858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 3624645 - 3624582
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtggg 79  Q
    ||||||| || ||||||||||||||||| |||||||||| |||||  || | ||||||||||||    
T  3624645 gagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 11492085 - 11492127
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattacc 59  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||    
T  11492085 agacctcgagaaggagcacactcccagatctcaagccaatacc 11492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 26688930 - 26688864
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||| ||||||||||||||||| || ||||||||||  ||||  || | |||||||||||||||    
T  26688930 gagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttg 26688864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 30483903 - 30483961
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||||||||||||||| ||||||||||| |||||   | | |||||||||||||||    
T  30483903 gaggaggagcacactcccatatcccaagccaataccactgggccaacccaagtgggttg 30483961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 4830552 - 4830487
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||| ||||||| |||||||||| | | |||||  || | ||||||||||||||    
T  4830552 gagacctcgaggaggaacacactctcagatcccaaacaaataccaccaggccaacccaagtgggtt 4830487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 6569791 - 6569820
Alignment:
Q  25 aggaggagcacactcccagatcccaagcca 54  Q
    ||||||||||||||||||||||||||||||    
T  6569791 aggaggagcacactcccagatcccaagcca 6569820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 18540363 - 18540298
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||| || |||||||||| |||||||||| |||||  || | ||||||||||||||    
T  18540363 gagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 23361660 - 23361725
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||||| |||||||| || |||||  ||   ||||||||||||||    
T  23361660 gagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 23874393 - 23874458
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||| ||| | |||||| |||||||||| |||||  || | ||||||||||||||    
T  23874393 gagacctcgaggaggcgcagattcccaggtcccaagccaataccactaggccaacccaagtgggtt 23874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28783125 - 28783060
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| || ||||||| |||||  |  | ||||||||||||||    
T  28783125 gagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 44780125 - 44780190
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||  |||||||||| | |||  || | ||||||||||||||    
T  44780125 gagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggccaacccaagtgggtt 44780190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6536585 - 6536541
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||||| || |||||||||| |||||    
T  6536585 gagaccttgaggaggagcacactcctaggtcccaagccaatacca 6536541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 11793533 - 11793597
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| ||||||||||||||||| || |||||||| |  ||||  |||| ||||||||||||||    
T  11793533 agaccttgaggaggagcacactccaaggtcccaagcgaacaccacaagaccaacccaagtgggtt 11793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 12281559 - 12281515
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||| |||||||| ||| |||||||||| |||||    
T  12281559 gagacctcgaggaggggcacactctcaggtcccaagccaatacca 12281515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20994479 - 20994535
Alignment:
Q  26 ggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||||||||||||| ||||||| || |||||  || | |||||||||||||||    
T  20994479 ggaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggttg 20994535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 30774747 - 30774791
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||| |||||| ||||||||||| ||| |||||    
T  30774747 gagacctcgaggaggaacacacttccagatcccaaaccaatacca 30774791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 35690075 - 35690119
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||| || |||||||||||||||| |||||    
T  35690075 gagaccttgaggaggagcaaacacccagatcccaagccaatacca 35690119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 2446373 - 2446308
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||||||||||||||||  |||||||||| |||||| |||| ||||||||||||||    
T  2446373 gagatctcgaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 25590676 - 25590609
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttgg 83  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||  ||   ||||||||||||||||    
T  25590676 gagacctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaagtgggttgg 25590609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 20335842 - 20335908
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||||||||||||||||||||||  |||||||||| ||||   |||| |||||||||||||||    
T  20335842 gagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggttg 20335908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 17041023 - 17041088
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||| ||||||||||||||| | |||  |||| ||||||||||||||    
T  17041023 gagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggtt 17041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 22760928 - 22760863
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| ||||||| || |||||  |||| ||||||||||||||    
T  22760928 gagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 26459421 - 26459486
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  26459421 gagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 43215249 - 43215184
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||| || |||||||||| |||||  |||| ||||||||||||||    
T  43215249 gagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 48772003 - 48771938
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||| |||||||||||||||||||||||||||||| |||||  |  | ||||||||||||||    
T  48772003 gagacctcaaggaggagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 21854605 - 21854550
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtggg 79  Q
    ||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||    
T  21854605 gaggaggagcacactcccagatccctagccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 26703190 - 26703152
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  26703190 gagacctcgagaaggagcacactcccagatcccaagcca 26703152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 28236591 - 28236637
Alignment:
Q  15 agagacctcgaggaggagcacactcccagatcccaagccattaccat 61  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  28236591 agagacctcgaggaggagcgcactcccaggtcccaagccaataccat 28236637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 25021354 - 25021411
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  25021354 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 45709719 - 45709784
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||| |||||||||||| | |||||  || | ||||||| ||||||    
T  45709719 gagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggtt 45709784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 5934183 - 5934148
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagcca 54  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5934183 acctcaaggaggagcacactcccagatcccaagcca 5934148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 23301613 - 23301679
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||| ||||||||||||||||||  ||||||| || |||||  || | |||||||||||||||    
T  23301613 gagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggttg 23301679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 5668582 - 5668627
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccat 61  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||||    
T  5668582 gagacctcgaggaggagcacacttccatgtcccaagccaataccat 5668627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9871297 - 9871334
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc 53  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  9871297 gagacttcgaggaggagcacactcccaaatcccaagcc 9871334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 15137618 - 15137553
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||| | |||||||| || |||||  || | ||||||||||||||    
T  15137618 gagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 18363761 - 18363696
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||||| ||| ||||||  |||||  || | ||||||||||||||    
T  18363761 gagaccttgaggaggagcacactcccaaatctcaagcctataccactaggccaacccaagtgggtt 18363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 23552183 - 23552118
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||| ||||||| || || ||  || | ||||||||||||||    
T  23552183 gagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggtt 23552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 29785312 - 29785349
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc 53  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  29785312 gagaccttgaggaggagcacacttccagatcccaagcc 29785349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34898478 - 34898515
Alignment:
Q  20 cctcgaggaggagcacactcccagatcccaagccatta 57  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  34898478 cctcaaggaggagcacactcccagatcccaagctatta 34898515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37085563 - 37085604
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||| ||||||||||||| ||||||||||| |||||    
T  37085563 acctcgaggatgagcacactcccaaatcccaagccaatacca 37085604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39631909 - 39631844
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||  |||||||| |||||||||| |||||  || | ||||||||||||||    
T  39631909 gagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 42836020 - 42836077
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||| |||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  42836020 gaggaagagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 30442552 - 30442488
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| ||||||||||| |||||||| |||||||||| |||||   | | ||||||||||||||    
T  30442552 agaccttgaggaggagcaaactcccaggtcccaagccaataccactgggccaacccaagtgggtt 30442488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 11593 - 11549
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  11593 gagacctcgaggaggagcacactcccagatcccaagccaatacca 11549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 15786331 - 15786393
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |  |||| |||||||||||    
T  15786331 gagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagtgg 15786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 24047116 - 24047174
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtg 77  Q
    ||||||||||||||||||||||||  || ||||||| ||||||||||| ||||||||||    
T  24047116 acctcgaggaggagcacactcccaagtctcaagccaataccatgagaccaacccaagtg 24047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 40257464 - 40257399
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||||||||| || ||||||| |||||  || | ||||||||||||||    
T  40257464 gagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 41508896 - 41508831
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||  || | ||||||||||||||    
T  41508896 gagaccttgaggaggagcacactcccagatcccaaaccagtaccaccaggccaacccaagtgggtt 41508831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 45235390 - 45235455
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||||||||||||||||  |||||| ||| |||||| |||| ||||||||||||||    
T  45235390 gagatctcgaggaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgggtt 45235455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 25297836 - 25297772
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||||| ||||||| ||| || |||||  |||| ||||||||||||||    
T  25297836 agacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtt 25297772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 33700784 - 33700847
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtggg 79  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||  || | ||||||||||||    
T  33700784 gagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19528338 - 19528404
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    ||||||| ||||||||||||||||  ||||||||||||| |||||  || | |||||||||||||||    
T  19528338 gagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggttg 19528404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 50901647 - 50901581
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc-attaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||  || | ||||||||||||||    
T  50901647 gagacctcgaggaggagcacactaccaggtcccaagccaattaccactaggccaacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8177196 - 8177237
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  8177196 accttgaggaggagcacactcccagatcccaagccaatacca 8177237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 9165214 - 9165271
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||| |||||||||| |||||  || | ||||||||||||||    
T  9165214 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 26232398 - 26232459
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||  |||| |||||||||||    
T  26232398 agacctcaagcaggagcacactcccagatctcaagccaataccactagaccaacccaagtgg 26232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 44046162 - 44046203
Alignment:
Q  19 acctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  44046162 accttgaggaggagcacactcccagatcccaagccaatacca 44046203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 51703836 - 51703779
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||||||||||||||||| |||||||| |||||  |||| ||||||| ||||||    
T  51703836 gaggaggagcacactcccagattccaagccaataccactagaccaacccaaatgggtt 51703779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 51814559 - 51814494
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||| |||||| |||| || |||||| || | ||||||||||||||    
T  51814559 gagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 12370228 - 12370192
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagc 52  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12370228 gagacctcgaggaggagcacactcccaggtcccaagc 12370192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18459243 - 18459307
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagcc-attaccatgagacaaacccaagtgggt 80  Q
    ||||||| ||||||||||||||||||  ||||||||| |||||||  |||| |||||||||||||    
T  18459243 agacctcaaggaggagcacactcccaagtcccaagccaattaccactagaccaacccaagtgggt 18459307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 31794276 - 31794340
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| |||||||||||||||||||  |||||||||| |||||  || | ||||||||||||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgggtt 31794340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 36371534 - 36371470
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||| |||||||||||||||||||| | |||||||| |||||  || | ||||||||||||||    
T  36371534 agaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 36371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 12587335 - 12587300
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaag 51  Q
    |||||||||||||||||||||||| |||||||||||    
T  12587335 gagacctcgaggaggagcacactcacagatcccaag 12587300  T

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Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 17439982 - 17439951
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcc 47  Q
    ||||||||||||||||||||||||||||||||    
T  17439982 gagacctcgaggaggagcacactcccagatcc 17439951  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 52336794 - 52336829
Alignment:
Q  25 aggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  52336794 aggaggagcacactcccagatcccaagccaatacca 52336829  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 2799927 - 2799890
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc 53  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  2799927 gagaccttgaggaggagcacactcccagatctcaagcc 2799890  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 4825036 - 4824975
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtg 77  Q
    ||||||| || |||||||||||||| || ||||||||||  ||||| |||| ||||||||||    
T  4825036 gagaccttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtg 4824975  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 9117184 - 9117147
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagcc 53  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  9117184 gagacctcaaggaggagcacacttccagatcccaagcc 9117147  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 10526888 - 10526823
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| ||||||||||| |||||||| |||||||||| |||||   ||| ||||||| ||||||    
T  10526888 gagaccttgaggaggagcaaactcccaggtcccaagccaataccactggaccaacccaaatgggtt 10526823  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16893459 - 16893394
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||| ||||||||| ||| ||||||| |||||  ||   ||||||||||||||    
T  16893459 gagacctcgaggaggagtacactcccaaatctcaagccaataccaacaggtcaacccaagtgggtt 16893394  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 17745267 - 17745328
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtg 77  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||  || | ||||||||||    
T  17745267 gagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaagtg 17745328  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 9643820 - 9643864
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||| || |||||||||||||||||||||| |||||    
T  9643820 gagaccttgaggatgaacacactcccagatcccaagccaatacca 9643864  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 17410296 - 17410252
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||| ||||||||||| |||||||||||||||||| ||| |||||    
T  17410296 gagatctcgaggaggaccacactcccagatcccaaaccaatacca 17410252  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 25494080 - 25494124
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||||||||||| |||| ||||| ||||||||||||| |||||    
T  25494080 gagacctcgaggagaagcaaactcctagatcccaagccaatacca 25494124  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31383809 - 31383853
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    |||||| | ||||||||||||||||||| |||||||||| |||||    
T  31383809 gagaccccaaggaggagcacactcccaggtcccaagccaatacca 31383853  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 44126460 - 44126396
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggt 80  Q
    ||||||||| |||||||||||||||||| ||||| | || |||||  || | |||||||||||||    
T  44126460 gagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggccaacccaagtgggt 44126396  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 46146291 - 46146343
Alignment:
Q  29 ggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||||||| ||||||||||||||| | ||||||  ||| ||||||||||||||    
T  46146291 ggagcacattcccagatcccaagctaataccatcggaccaacccaagtgggtt 46146343  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 157000 - 157042
Alignment:
Q  18 gacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  157000 gacctcgaggaggagcacactcccagatctcaagccaatacca 157042  T

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Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 41644 - 41709
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||||||||||| |||| |||||| ||||||| |||||  || | ||||||||||||||    
T  41644 gagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 19858 - 19903
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccat 61  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||    
T  19858 gagacctcaaggaggagcagactcccagatcccaagccaataccat 19903  T

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Target: scaffold1367 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 851 - 895
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  851 gagacttcgaggaggagcacattcccagatcccaagccaatacca 895  T

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Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 13057 - 13101
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattacca 60  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||    
T  13057 gagaccttgaggaggagcacactcccagatctcaagccaatacca 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 47439 - 47381
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggttg 82  Q
    |||||||| || |||||||||||| |||||| |||||  || |||||||||||||||||    
T  47439 gaggaggaacatactcccagatcctaagccaataccacaaggcaaacccaagtgggttg 47381  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 94982 - 95044
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgg 78  Q
    ||||||| |||||||||||||||||||| | |||||||| |||||  || | |||||||||||    
T  94982 gagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgg 95044  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 2481 - 2546
Alignment:
Q  16 gagacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||| |||||||||||||||||||||||| || ||| |||||   ||| ||||||| ||||||    
T  2481 gagaccttgaggaggagcacactcccagatccaaaaccaataccaccggaccaacccaaatgggtt 2546  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 14990 - 15047
Alignment:
Q  24 gaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    ||||||||||| |||||||| ||| |||||| || ||| |||| ||||||||||||||    
T  14990 gaggaggagcatactcccagttcctaagccaatagcatcagactaacccaagtgggtt 15047  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 10283 - 10219
Alignment:
Q  17 agacctcgaggaggagcacactcccagatcccaagccattaccatgagacaaacccaagtgggtt 81  Q
    |||| ||||||||  || |||||||||||||||||||| || ||| || | ||||||||||||||    
T  10283 agacttcgaggagaggcgcactcccagatcccaagccaatatcatcaggccaacccaagtgggtt 10219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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