View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_80 (Length: 341)
Name: NF8986_low_80
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_80 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 52646533 - 52646201
Alignment:
| Q |
1 |
aagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcatgaccagcagctcctgttgccctgctctctggtccgtattcgtt |
100 |
Q |
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| T |
52646533 |
aagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcatgaccagcagctcctgttgccctgctctctggtccgtattcgtt |
52646434 |
T |
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| Q |
101 |
ctcaatctagaaagagaaataattttttcacatcaaaacattgatgtcaaatgcagtgtcatttgatttttgagtatttttgaaatgtacttagactgta |
200 |
Q |
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| T |
52646433 |
ctcaatctagaaagagaaataattttttcacatcaaaacattgatgtcaaatgcagtgtcatttgattt----------ttgaaatgtacttagactgta |
52646344 |
T |
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| Q |
201 |
gcaaaaataagagagggctagagataa--acacacgatatgtgtattttgttgttcaaataacttatctgacctagaaaacaataggactacatatctag |
298 |
Q |
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| T |
52646343 |
gcaaaaataagagagggctagagataaacacacacgatatgtgtattttgttgttcaaataacttatctgacctagaaaacaataggactacatatctag |
52646244 |
T |
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| Q |
299 |
aagtagtaatttgatggtatgaaggtttttgagcatttccttc |
341 |
Q |
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| T |
52646243 |
aagtagtaatttgatggtatgaaggtttttgagcatttccttc |
52646201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 7345341 - 7345272
Alignment:
| Q |
1 |
aagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcatgaccagcagctcc |
70 |
Q |
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| T |
7345341 |
aagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcatgaccagaagctcc |
7345272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 49107726 - 49107680
Alignment:
| Q |
125 |
ttttcacatcaaaacattgatgtcaaatgcagtgtcatttgattttt |
171 |
Q |
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| T |
49107726 |
ttttaacatcaaaactttgatgtcaaatacagcgtcatttgattttt |
49107680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 32122371 - 32122298
Alignment:
| Q |
115 |
agaaataattttttcacatcaaaacattgatgtcaaatgcagtgtcatttgatttttgagtatttttgaaatgt |
188 |
Q |
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| T |
32122371 |
agaaatgatgttttaacatcaaaattttgatgtcaaatacggtgccctttgatttttgtgtattttttaaatgt |
32122298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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