View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_83 (Length: 337)
Name: NF8986_low_83
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_83 |
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| [»] scaffold2113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 28048011 - 28048319
Alignment:
| Q |
17 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcagaggactatgaatgtcatacgccgaacggcgatgagaatgtgttcgttctgttctcat |
116 |
Q |
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| T |
28048011 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcataggactatgaatgtcatacgctgaacggcgatgagaatgtgttcgttctgttctcaa |
28048110 |
T |
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| Q |
117 |
ttgattatgcttcatgcaatttgggagagatagatagactatgtgacttaccttttaacatttatatgataagcatgtgtatgatataagcgcttaatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28048111 |
ttgattatgcttcatgcaatttgggagagatagatagactatgtgacttaccttttaacatttatatgataagcatgtgtatgatataagcgcttaatta |
28048210 |
T |
|
| Q |
217 |
aatagcttatccaaaccgataaatgcaatacctaatttcttaaatttttctcaattaaaggaatttatgtcatttagtcacaattctgattgcattccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28048211 |
aatagcttatccaaaccgataaatgcaatacctaatttcttaaatttttctcaattaaaggaatttatgtcatttagtcacaattctgattgcattccac |
28048310 |
T |
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| Q |
317 |
tgtgatgtc |
325 |
Q |
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||||||||| |
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| T |
28048311 |
tgtgatgtc |
28048319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 28077361 - 28077598
Alignment:
| Q |
17 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcagaggactatgaatgtcatacgccgaacggcgatgagaatgtgttcgttctgttctcat |
116 |
Q |
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| T |
28077361 |
aaaatctgcatgcaattgtatcctggatgattacaatgcgagcaggactaagaacgtcgtttgctgatcgggaatgagaatgtgttcgttctgttctcaa |
28077460 |
T |
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| Q |
117 |
ttgattatgcttcatgcaatttgggagagatagatagactatgtgacttacctttt-aacatttatatgataagcatgtgtatgatataagcgcttaatt |
215 |
Q |
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| T |
28077461 |
tttattatggttcatccaatttgcgagagaaatg-agactatgtgatttacctttttaacatttatacggcaagcatgtgtatgatataagcacttaatt |
28077559 |
T |
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| Q |
216 |
aaatagcttatccaaaccgataaatgcaatacctaattt |
254 |
Q |
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| T |
28077560 |
aaggagtttatccaaacaggtaaatgtaatacctaattt |
28077598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 28004751 - 28004838
Alignment:
| Q |
205 |
agcgcttaattaaatagcttatccaaaccgataaatgcaatacctaatttcttaaatttttctcaattaaaggaatttatgtcattta |
292 |
Q |
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| T |
28004751 |
agcgcttaattaagtagtttatccaaacaggtaaatgcaatacctaatttcttaagtttttctcaattaaaggaatttatgtcattta |
28004838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 27923835 - 27923922
Alignment:
| Q |
223 |
ttatccaaaccgataaatgcaatacctaatttcttaaatttttctcaattaaaggaatttatgtcatttagtcacaattctgattgca |
310 |
Q |
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| T |
27923835 |
ttatccaaacaggtaaatgcaataactaatttcttaagtttttcacaattaaaggaatttatgtcatttagtcacaatcctgattgca |
27923922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 28036782 - 28036911
Alignment:
| Q |
17 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcagaggactatgaatgtcatacgccgaacggcgatgagaatgtgttcgttctgttctcat |
116 |
Q |
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|||||||||||| |||||||||||||||||| |||||||| ||||||| ||| | | || || |||||| ||||||||||||||| ||||||||||| |
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| T |
28036782 |
aaaatctgcatggaattgtatcctggatgattagaatgcgagtaggactaagaacgccgtatgctgaacggagatgagaatgtgttcattctgttctcaa |
28036881 |
T |
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| Q |
117 |
ttgattatgcttcatgcaatttgggagaga |
146 |
Q |
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| T |
28036882 |
ttgattgtggttcatccaatttgggagaga |
28036911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 28004444 - 28004578
Alignment:
| Q |
17 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcagaggactatgaatgtc-----atacgccgaacggcgatgagaatgtgttcgttctgtt |
111 |
Q |
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| T |
28004444 |
aaaatctgtatgaaattgtatcctggatgatgagaatgtgcgtaggactaaggacgtcgaacggtactctgaacagcgatgataatgtgttcattccttt |
28004543 |
T |
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| Q |
112 |
ctcatttgattatgcttcatgcaatttgggagaga |
146 |
Q |
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| T |
28004544 |
ctcaattgattatggttcatgcaaattggaagaga |
28004578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2113 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold2113
Description:
Target: scaffold2113; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 398 - 521
Alignment:
| Q |
17 |
aaaatctgcatgcaattgtatcctggatgatgagaatgcgcagaggactatgaatgtc-----atacgccgaacggcgatgagaatgtgttcgttctgtt |
111 |
Q |
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||||||||||| |||||||||||||||||||||||||| | |||||||| ||| ||| ||||| |||| ||||||| ||||||||| |||| || |
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| T |
398 |
aaaatctgcatcaaattgtatcctggatgatgagaatgcacggaggactaagaacgtcgtgcggtacgctgaacagcgatgataatgtgttctttctatt |
497 |
T |
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| Q |
112 |
ctcatttgattatgcttcatgcaa |
135 |
Q |
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|||| ||||||||| ||||||||| |
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| T |
498 |
ctcaattgattatggttcatgcaa |
521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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