View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_84 (Length: 335)
Name: NF8986_low_84
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 82 - 309
Target Start/End: Original strand, 6391802 - 6392045
Alignment:
| Q |
82 |
aaaggccaacatactaatgagcctggaaaggtttgacaaggctttagaagtcctatacgagcttaaagagtacgctcccttcgaaagtagtgtatttgct |
181 |
Q |
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| T |
6391802 |
aaaggccaacattctaatgagcctggaaaggtttgacgaggctttagaagtcctagacgagcttaaagagtacgctcccttcgaaagtagtgtctttgct |
6391901 |
T |
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| Q |
182 |
ttgacgggaattatctataaaaggcgtaacatgcatgatagag-catctt---------------attgtatttgaaaccatctgcaacagatgctgcca |
265 |
Q |
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| T |
6391902 |
ttgatgggcaatatctataaaaggcgtaacatgcatgagagagccatgtttcattatggtattgctttggatttgaaaccatctgcaacggatgctgcca |
6392001 |
T |
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| Q |
266 |
ccattaaggtgattaacttacaatagggatttcccagttcacta |
309 |
Q |
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| T |
6392002 |
ccattaaggtgattagtttacaatagcaatttcctagttcacta |
6392045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 6425534 - 6425666
Alignment:
| Q |
82 |
aaaggccaacatactaatgagcctggaaaggtttgacaaggctttagaagtcctatacgagcttaaagagtacgctcccttcgaaagtagtgtatttgct |
181 |
Q |
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| T |
6425534 |
aaaggacaacatattaatgagcctggaaaggtttggagaggctttagaagtcctatacgagcttaaagagtacgctcccttcgaaagtagtgtatttgct |
6425633 |
T |
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| Q |
182 |
ttgacgggaattatctataaaaggcgtaacatg |
214 |
Q |
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| T |
6425634 |
ttgacgggaattatctataaaaggcgtaacatg |
6425666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 6425118 - 6425300
Alignment:
| Q |
31 |
gataaatgaggataggttcgtcgtgatggagaacctattttagcagataagaaaggccaacatactaatgagcctggaaaggtttgacaaggctttagaa |
130 |
Q |
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| T |
6425118 |
gataagtgaggataggtttgtcgtgatggagaacctattttagaagataagaaaggccggcatactaatgagccaggaaaggcttgacgaggctttagaa |
6425217 |
T |
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| Q |
131 |
gtcctatacgagcttaaagagtacgctcccttcgaaagtagtgtatttgctttgacgggaattatctataaaaggcgtaacatgcat |
217 |
Q |
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| T |
6425218 |
gtcctagttga---taaag-gtacgctccctttgaaggtaacgtctttgcattgatgggaaatatctataaaaggtgtaacatgcat |
6425300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6425448 - 6425513
Alignment:
| Q |
20 |
aaaatatctcagataaatgaggataggttcgtcgtgatggag-aacctattttagcagataagaaa |
84 |
Q |
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| T |
6425448 |
aaaatatctcagataaatgaggataggctggtcgtgatggagaaagctattttagcagataagaaa |
6425513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 6418409 - 6418266
Alignment:
| Q |
83 |
aaggccaacatactaatgagcctggaaaggtttgacaaggctttagaagtcctatacgagcttaaagagtacgctcccttcgaaagtagtgtatttgctt |
182 |
Q |
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|||||||| |||||||||||| |||||| || || ||||||| ||||||||| | |||||||||||||| |||||| ||||| |||||| | |||| |
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| T |
6418409 |
aaggccaatatactaatgagcttggaaaaattcgatgaggctttggaagtcctagaggagcttaaagagtatgctccccgcgaaattagtgtctacgctt |
6418310 |
T |
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| Q |
183 |
tgacgggaattatctataaaaggcgtaacatgcatgatagagca |
226 |
Q |
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| T |
6418309 |
tgatgggaaggatctataaaaggcgtaacatgcatgagagagca |
6418266 |
T |
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