View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_88 (Length: 324)
Name: NF8986_low_88
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2927971 - 2927654
Alignment:
| Q |
1 |
aagttaagcggacataacaatgattttatgtttacaggttttcttagtacccgtccatcaggaagacaaagagccaaagcattggctcaacctaagataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927971 |
aagttaagcggacataacaatgattttatgtttacaggttttcttagtacccattcatcaggaagacaaagagccaaagcattggctcaacctaagataa |
2927872 |
T |
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| Q |
101 |
tggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccag-tttggtatggttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2927871 |
tggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccagttttggtatggttg |
2927772 |
T |
|
| Q |
200 |
tattatgatctttatgggacttgattgttagacttgtgttttcaaataagcgacgctttatgttagaatatccgagaaatatctgataatatgtagttgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2927771 |
tattatgatctttatgggacttgattgttagacttgtgttttcaaataagcgacgctttatgttagaaaatccgagaaatatctgataatatgtagttgt |
2927672 |
T |
|
| Q |
300 |
attatgatcttttctgtg |
317 |
Q |
| |
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|||||||||||||||||| |
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| T |
2927671 |
attatgatcttttctgtg |
2927654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 2311299 - 2311616
Alignment:
| Q |
1 |
aagttaagcggacataacaatgattttatgtttacaggttttcttagtacccgtccatcaggaagacaaagagccaaagcattggctcaacctaagataa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311299 |
aagttaagcagacataacaatgattttatgtttacaggttttcttagtacccatccatcaggaagacaaagagccaaagcattggctcaacctaagataa |
2311398 |
T |
|
| Q |
101 |
tggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacattcaccag-tttggtatggttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2311399 |
tggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatttcattctttaggaatgcacgttcaccagttttggtatggttg |
2311498 |
T |
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| Q |
200 |
tattatgatctttatgggacttgattgttagacttgtgttttcaaataagcgacgctttatgttagaatatccgagaaatatctgataatatgtagttgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2311499 |
tattatgatctttatgggacttgattgttagacttgtgttttaaaataagcgacgctttatgttagaaaatccgagaaatatctgataatatgtagttgt |
2311598 |
T |
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| Q |
300 |
attatgatcttttctgtg |
317 |
Q |
| |
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||||| ||||| |||| |
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| T |
2311599 |
ggtatgaccttttatgtg |
2311616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10173615 - 10173517
Alignment:
| Q |
68 |
aaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatttcattctt |
166 |
Q |
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||||||| |||||| |||||| |||| |||||||| | |||||||||||| | ||||| |||||||||| ||| ||| |||| | ||||||||||||| |
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| T |
10173615 |
aaagagcgaaagcagtggctcgacctgagataatgcaggaagctcttattttgtataaagatgcaagaggcaggcgtggggttgaatgatttcattctt |
10173517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 29088783 - 29088671
Alignment:
| Q |
59 |
caggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaactgatt |
158 |
Q |
| |
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|||||||| |||||| |||||| ||| || ||||||||||||||||||||||||| | | ||||||||||||||| |||| ||| | || | ||||| |
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| T |
29088783 |
caggaagagaaagagtcaaagcgttgcttcggcctaagataatggaagaagctcttactttgtataatgatgcaagaacaagacgtgggattgaatgatt |
29088684 |
T |
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| Q |
159 |
tcattctttagga |
171 |
Q |
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||||||||||||| |
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| T |
29088683 |
tcattctttagga |
29088671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 1237844 - 1237727
Alignment:
| Q |
54 |
tccatcaggaagacaaagagccaaagcattggctcaacctaagataatggaagaagctcttattctatataatgatgcaagagcaaggagtgaggttaac |
153 |
Q |
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||||||||| ||| ||||||||||||| |||||| ||| |||||||| | ||||||||| || ||||||||||| |||| |||| ||| |||| | |
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| T |
1237844 |
tccatcaggtagagaaagagccaaagcggtggctcgaccagagataatgaaggaagctcttcttttatataatgattatagaggaaggcgtggggttgaa |
1237745 |
T |
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| Q |
154 |
tgatttcattctttagga |
171 |
Q |
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||||||||||||| |||| |
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| T |
1237744 |
tgatttcattcttcagga |
1237727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 8083223 - 8083175
Alignment:
| Q |
121 |
tataatgatgcaagagcaaggagtgaggttaactgatttcattctttag |
169 |
Q |
| |
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|||||||||| |||||| ||| |||||||| | |||||||||||||||| |
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| T |
8083223 |
tataatgatgtaagagcgaggcgtgaggttgaatgatttcattctttag |
8083175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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