View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_90 (Length: 321)
Name: NF8986_low_90
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_90 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 29205982 - 29206303
Alignment:
| Q |
1 |
gtagaaaattaatgatgatctgtgataattctattcagttcatttccaatt--ggtatggtatgtaaagatccttaatcaaaggacacaaaaaacacgat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29205982 |
gtagaaaattaatgatgatctgtgataattctattcagttcatttccaaacaaggcatggtatgtaaagatccttaatcaaaggacacaaaaaacacgat |
29206081 |
T |
|
| Q |
99 |
tcatctttattatttgtgacaaagaatacatnnnnnnnnnnnnnnnnntctcgccgtctaattaagtggagctaggctatatggtacaaaagctctcaag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29206082 |
tcatctttattatttgtgacaaagaatacataaaaaaaaataaaaaaatctcgccgtctaattaagtggagctaggctatatggtacaaaagctcttaag |
29206181 |
T |
|
| Q |
199 |
ttttctctctatggcat----------------aacatgcatgaaattaatgtgacattatagatgcttctcttcgcaactgtataaagcttctatttaa |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206182 |
ttttctctctatggcatggcatggatagtgtacaacatgcatgaaattaatgtgacattatagatgcttctcttcgcaactgtataaagcttctatttaa |
29206281 |
T |
|
| Q |
283 |
tggggttgttaagagcttgatg |
304 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29206282 |
tggggttgttaagagcttgatg |
29206303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University