View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_94 (Length: 315)
Name: NF8986_low_94
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_94 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 29026856 - 29026555
Alignment:
| Q |
1 |
gaagcggtaaacagaattatctcttgaagacatccttttaatcacgatttgatactctttagtgtgtttcttgaaagagtgtaggatatgatcttccttt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29026856 |
gaagcggtaaacagaattatttcttgaagacatccttttaatcacgatttgatactctttagtgtgtttgttgaaagagtgtaggatatgatcttccttt |
29026757 |
T |
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| Q |
101 |
cctttctcaagactggatggataagcatacaatgacatcaaacctctcattaaagacattccataaaagttactctggtcaagtcatagtccatatgtct |
200 |
Q |
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| T |
29026756 |
cctttctcaagcctggatggataggcatacaatgacatcaaacctctcattaaagacattccataaaagttactttggtcaagtcatagtccatatgtct |
29026657 |
T |
|
| Q |
201 |
caagacatgtatttagggttacaatgattctatc-atttgtttcgtgaatagtcattaggtatcaaaccatatccatcattcaagcacgctcatcatgtg |
299 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||| |||||||||||||||| ||| |||||||| || |
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| T |
29026656 |
caagacatgtatttagggttacaatgattctacctttttgttttgtgaatagtcataaggtatcaaatcatatccatcattcaa-cacactcatcatatg |
29026558 |
T |
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| Q |
300 |
atg |
302 |
Q |
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||| |
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| T |
29026557 |
atg |
29026555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 40887465 - 40887525
Alignment:
| Q |
214 |
tagggttacaatgattctatcatttgtttcgtgaatagtcattaggtatcaaaccatatcc |
274 |
Q |
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| T |
40887465 |
tagggttacaacggttctaccaattctttcatgaatagtcataaggtatcaaaccatatcc |
40887525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 22382075 - 22382128
Alignment:
| Q |
214 |
tagggttacaatgattctatcatttgtttcgtgaatagtcattaggtatcaaac |
267 |
Q |
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| T |
22382075 |
tagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaac |
22382128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 42257044 - 42256987
Alignment:
| Q |
214 |
tagggttacaatgattctatcatttgtttcgtgaatagtcattaggtatcaaaccata |
271 |
Q |
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| T |
42257044 |
tagggttacaatggctctatcaattctttcatgaatagttataaggtatcaaaccata |
42256987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 21074 - 21232
Alignment:
| Q |
17 |
ttatctcttgaagacatccttttaatcacgatttgatactctttagtgtgtttcttgaaagagtgtaggatatgatcttcctttcctt---tctcaagac |
113 |
Q |
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|||||||||||| ||||||||||||| ||| |||| ||||| | ||| | |||| || || | |||||||| ||| || | ||||| ||||||| | |
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| T |
21074 |
ttatctcttgaacacatccttttaatgttgatctgatgctcttgaatgtctctctttaatgattataggatataatcgtcatctccttctttctcaagtc |
21173 |
T |
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| Q |
114 |
tggatggataagcatacaatgacatcaaacctctcattaaagacattccataaaagtta |
172 |
Q |
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| T |
21174 |
tcaatggataggcatacaatgacatcaaacctctcattacagatatgtcataaaagtta |
21232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 25019854 - 25019911
Alignment:
| Q |
214 |
tagggttacaatgattctatcatttgtttcgtgaatagtcattaggtatcaaaccata |
271 |
Q |
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||||||||||||| ||||| || || |||| ||||||||||| ||||||||||||||| |
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| T |
25019854 |
tagggttacaatggttctaccaattctttcatgaatagtcataaggtatcaaaccata |
25019911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 39905965 - 39905908
Alignment:
| Q |
214 |
tagggttacaatgattctatcatttgtttcgtgaatagtcattaggtatcaaaccata |
271 |
Q |
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||||||||||||| ||||| || || |||| ||||||| ||| ||||||||||||||| |
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| T |
39905965 |
tagggttacaatggttctaccaattctttcatgaatagccataaggtatcaaaccata |
39905908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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