View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_98 (Length: 299)

Name: NF8986_low_98
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_98
NF8986_low_98
[»] chr3 (9 HSPs)
chr3 (13-280)||(36810252-36810517)
chr3 (100-272)||(36876177-36876349)
chr3 (36-268)||(27005023-27005255)
chr3 (27-280)||(33708265-33708518)
chr3 (27-257)||(33714131-33714361)
chr3 (169-280)||(33397115-33397226)
chr3 (13-189)||(33093164-33093340)
chr3 (27-114)||(33397263-33397350)
chr3 (13-115)||(37580053-37580155)
[»] chr7 (1 HSPs)
chr7 (159-273)||(18723716-18723830)
[»] chr4 (1 HSPs)
chr4 (176-222)||(3438035-3438081)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 36810252 - 36810517
Alignment:
Q  13 ctgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36810252 ctgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctc 36810351  T
Q  113 tctgttagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgt 212  Q
    |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36810352 tct--tagaatctttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgt 36810449  T
Q  213 ctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaactt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36810450 ctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaactt 36810517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 36876349 - 36876177
Alignment:
Q  100 tttgaattctctctctgttagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaact 199  Q
    |||||| ||| ||||||||| ||||||||  |||||||||||||| |||||| ||||||||||||| | |||||||||| ||||||||||||||||||||    
T  36876349 tttgaaatctttctctgttacaaactttattgaagcaattgaaactaataaaattactccatactttgttgattcattgtggagtttgaagggattaact 36876250  T
Q  200 tgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttga 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36876249 tgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcctttga 36876177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 27005023 - 27005255
Alignment:
Q  36 ttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactttacagaagc 135  Q
    |||||||||||||||  |||||||||| || |||||||||| ||||||| | |||||||||||||||||||||| |||||||||| || |||   |||||    
T  27005023 ttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttagtaattttcaggaagc 27005122  T
Q  136 aattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttc 235  Q
    || || |   |||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||| ||    
T  27005123 aaatggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatctc 27005222  T
Q  236 ttgctttgctctctagcacttgaagctcttcct 268  Q
     ||||||||||| ||||||||||| ||||||||    
T  27005223 atgctttgctctttagcacttgaatctcttcct 27005255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 33708265 - 33708518
Alignment:
Q  27 aagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactt 126  Q
    |||||||| |||||||| | || | || | |||||| ||||| ||||||| ||||||| ||||||||||| | ||| | |||| | |||||||   ||||    
T  33708265 aagaggtgcttatgttcaactgtcgttccataacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgttaccgactt 33708364  T
Q  127 tacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatt 226  Q
    || |||||| |  ||||   | || |||||| | | ||||  ||||||||||  |||||||||| | |||||||||||||||||||| | ||||||||||    
T  33708365 taaagaagctagagaaagagaaaatgttacttcgtgcttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcatt 33708464  T
Q  227 tctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaactt 280  Q
     ||||||  ||||||| ||||||| |||||| |||||||||||||||| |||||    
T  33708465 actgattcgttgctttactctctaacacttgcagctcttcctttgaggaaactt 33708518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 33714131 - 33714361
Alignment:
Q  27 aagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactt 126  Q
    ||||||||||||||| | | |||| || | |||||| ||||||||||||| ||||||| | ||||||||| ||||| | |||| | ||| |||  |||||    
T  33714131 aagaggtggttatgtacaaatgccgttccataacacatgctggtattgcttctgcaatctaccagagaccgactttaagttctttatctcttaccaactt 33714230  T
Q  127 tacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatt 226  Q
    ||  ||||| |  ||||   | || ||||||   ||||||  ||||||||||| |||||| ||| | |||||||||||||||||||| | ||||||||||    
T  33714231 taaggaagctagagaaatagaaaatgttactttgtacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtcctattcatgcatt 33714330  T
Q  227 tctgatttcttgctttgctctctagcacttg 257  Q
     ||||||  ||||||| ||||||||||||||    
T  33714331 actgattcgttgctttactctctagcacttg 33714361  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 33397226 - 33397115
Alignment:
Q  169 tgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcct 268  Q
    ||||||||||  |||||||||| |||||||||||||||||||||| ||||||  |||  ||||     |||||||||  |||||||||||||||||||||    
T  33397226 tgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctcttcct 33397127  T
Q  269 ttgagggaactt 280  Q
    |||||| |||||    
T  33397126 ttgaggaaactt 33397115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 33093164 - 33093340
Alignment:
Q  13 ctgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctc 112  Q
    |||| ||||| |||| |||||||||||||| || || ||||| ||||| | ||||||||||||| ||||||| |   ||||||| | ||||  |||| ||    
T  33093164 ctgtaagcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttc 33093263  T
Q  113 tctgttagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaa 189  Q
    |||||| | |||||||  ||| |||  ||||  || || |||||| ||||||||  |||||| |||| |||||||||    
T  33093264 tctgttggcaactttatggaaccaagagaaagcaaaaatgttacttcatacttcattgattcgttggtgagtttgaa 33093340  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 33397350 - 33397263
Alignment:
Q  27 aagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctc 114  Q
    ||||| ||||||||||| | |||| ||| ||| ||| || |||| ||||| ||||||| || |||||||| |||||||||||| ||||    
T  33397350 aagagttggttatgttccaatgccatttgctatcacatgatggtcttgcttctgcaatatgtcagagaccaactttgaattctttctc 33397263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 37580053 - 37580155
Alignment:
Q  13 ctgtgagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctc 112  Q
    ||||||| || |||||||||||||| ||||  ||||||||  | |||||  || |||||| ||| ||||||| ||||| ||||| ||||||| |||| ||    
T  37580053 ctgtgagtttctagaagaggtggttttgttttattgccctcgcataacagatgatggtatggcttctgcaatctgccacagaccgactttgacttctttc 37580152  T
Q  113 tct 115  Q
    |||    
T  37580153 tct 37580155  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 18723716 - 18723830
Alignment:
Q  159 catacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga 258  Q
    ||||||||  ||||||||||| |||||||||| | ||||||||||||||   ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  18723716 catacttcattgattcattggcgagtttgaagcgcttaacttgtcttgaccagtccttttcatgcattactgatttcttgctttgctctctagcacttga 18723815  T
Q  259 agctcttcctttgag 273  Q
    |||||||||||||||    
T  18723816 agctcttcctttgag 18723830  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 3438035 - 3438081
Alignment:
Q  176 ttggggagtttgaagggattaacttgtcttgatttgtctttttcatg 222  Q
    |||| |||| |||||||||||||||||||||||||||| | ||||||    
T  3438035 ttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatg 3438081  T

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