View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_high_3 (Length: 504)
Name: NF8987_high_3
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Original strand, 7675686 - 7676165
Alignment:
| Q |
9 |
agcagagaaacatgtgaattttacactaccaagttatcaaaattttgtatttgtgcatatcattggttattttgaagttagggatattgatatttagttg |
108 |
Q |
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| T |
7675686 |
agcagtgaaacatgtgaattttacactaccaagttatcaaaattttgtatttgtgcatatcattggttattttgaagttagggatattgatatttagttg |
7675785 |
T |
|
| Q |
109 |
cagattgtgaaagttatgaattttgatatttctttgcagattgtccaactaactgcttctggaaactttgaagaggccttgtcattgtgcaagctgcttc |
208 |
Q |
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| T |
7675786 |
cagattgtgaaagttatgaattttgatatttctttgcagattgtccaactaactgcttctggaaactttgaagaggccttgtcattgtgcaagctgcttc |
7675885 |
T |
|
| Q |
209 |
cacctgaagattcaagtctacgtgctgcaaaagagggatcaattcatataaggttatttgccattatggattattctaacgaaacagactatggaatttt |
308 |
Q |
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| T |
7675886 |
cacctgaagattcaagtcttcgtgctgcaaaagagggatcaattcatataaggttatttgccattatggattattctaacgaaacagactatggaatttt |
7675985 |
T |
|
| Q |
309 |
cccctattgaattgaatacctttgatttataagttcatcttatttctgagcccccctactagccgagtagctggcggattaagtttggattgactgttga |
408 |
Q |
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| T |
7675986 |
cccctattgaattgaatacctttgatttataagttcatcttatttctgagcccccctactagccgagtagctggcggattaagtttggattgactgttga |
7676085 |
T |
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| Q |
409 |
tgtggactatgtatcaatatgatcatgatagctaatgtaagcccaaaaaagaaaattgtaatgcctgttatgttcattgt |
488 |
Q |
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| T |
7676086 |
tgtggactatgtatcaatatgatcatgatagctaatgtaagcccaaaaaagaaaattgtaatgcctgttatgttcattgt |
7676165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 135 - 263
Target Start/End: Complemental strand, 33047021 - 33046893
Alignment:
| Q |
135 |
tatttctttgcagattgtccaactaactgcttctggaaactttgaagaggccttgtcattgtgcaagctgcttccacctgaagattcaagtctacgtgct |
234 |
Q |
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|||||| ||||||||||||||| |||| ||| |||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
33047021 |
tatttcattgcagattgtccaattaacagctgctggtaacttcgaagaagctttgtcattgtgcaagctccttccacctgaagattcaaatcttcgtgct |
33046922 |
T |
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| Q |
235 |
gcaaaagagggatcaattcatataaggtt |
263 |
Q |
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| T |
33046921 |
gcaaaggaggattcaattcatataaggtt |
33046893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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