View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_high_4 (Length: 475)
Name: NF8987_high_4
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 51755663 - 51756116
Alignment:
| Q |
13 |
gagatggacatgtcagaaaattctccacttgacactctagctttcaactacttgagcttcgatttcttcaaccatttatggacatggctcgccgtaatct |
112 |
Q |
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| T |
51755663 |
gagatgaacatgttagaaaattctccacttgacactctagctttcaactacttgagcttcgatttcttcaaccatttatggacatggctcgccgtcatct |
51755762 |
T |
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| Q |
113 |
tctggaggatcccaacccctaaacctgaattgttacctccttcccacgacacttcctccgataaacctcacctaggtctggaagtgttggaacctcgtca |
212 |
Q |
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| T |
51755763 |
tctggaggatcccaacccctaaacctgaattgttacctccttcccacgacacttcctccgataaacctcacctaggtctggaagtgttggaacctcgtca |
51755862 |
T |
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| Q |
213 |
tgatgatgcttgtccagcgcgtgttcctagtaacagcgttgttgaagacgatgacggagttacaaagggaaagatgaagtttaccttgtattattatgac |
312 |
Q |
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| T |
51755863 |
tgattatgcttgtccagcgcgtgttcctagtaacagcgttgttgaagacgatgacggagttacaaagggaaagatgaagtttaccttgtattattatgac |
51755962 |
T |
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| Q |
313 |
------gatgaagatgacattgacagagaatgcaaggaaagtgttgagacgtt-nnnnnnntaacggaggaattatgggaagagaaagaaggaagattag |
405 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51755963 |
catgaagatgaagatgacattgacagagaatgcaaggagagtgttgagacgttaaaaaaaataacggaggaattatgggaagagaaagaaggaagattag |
51756062 |
T |
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| Q |
406 |
ggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaag |
459 |
Q |
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| T |
51756063 |
ggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaag |
51756116 |
T |
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