View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_high_5 (Length: 410)
Name: NF8987_high_5
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 8931286 - 8930887
Alignment:
| Q |
1 |
tgatctttgcttgtccatgtttgagatctagtctttaccgtatatgaatccatggatgaaactcattaaaacccatgttagttttacaagcaatatatat |
100 |
Q |
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| T |
8931286 |
tgatctttgcttctccatgtttgagatctagtctttcccgtatatgaatccatggatgtaactcattaaaacccatgttagttttacaagcaatatatat |
8931187 |
T |
|
| Q |
101 |
tactagttactacgattcagattacaataaaaccactaaaccgtactgcgagggctatcgcctccctcaccctagtcgccccctagctataacaaacggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931186 |
tactagttactacgattcagattacaataaaaccactgaaccgtactgcgagggctatcgcctccctcaccctagtcgccccctagctataacaaacggt |
8931087 |
T |
|
| Q |
201 |
tgggcctaagacacgtccctgcgaggatgggtttagaatcttgccatggggtgtacagaccctcctatagaaactaacagcttgccctttggtgggttgc |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931086 |
tgggcctaagacacgtccctgcgaggaagggtttagaatcttgccatggggtgtacagaccctcctatagaaactaacagcttgccctttggtgggttgc |
8930987 |
T |
|
| Q |
301 |
aatataattggttcaactattcacttttaaactagtaaactttaaattttatctgttagtttattcgtaataaactcattcacatatttgccacaggttc |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
8930986 |
aatataattggttcaactatttacttttaaactagtaaactttaaattttatctgttagtttaatcgtaataaactcattcacatatttgtcacaggttc |
8930887 |
T |
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