View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8987_high_8 (Length: 324)

Name: NF8987_high_8
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8987_high_8
NF8987_high_8
[»] chr2 (1 HSPs)
chr2 (11-306)||(28408282-28408578)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 28408282 - 28408578
Alignment:
Q  11 tttggtgttggtttgcggggatcctaaatataaacatt-cagtttgcctctttggaagacatatggaaacttagtgacaggaattgatcccctcaatgca 109  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28408282 tttggtgttggtttgcggggatcctaaatataaacatttcagtttgcctctttggaagacatatggaaactttgtgacaggaattgatcccctcaatgca 28408381  T
Q  110 aggtagtggtaaagtcttgcattgtgcataacatcattgccatttggtataggagaaatcaaatgagattcaatgataagcatattcatgggaaggttat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28408382 aggtagtggtaaagtcttgcattgtgcataacatcattgccatttggtataggagaaatcaaatgagattcaatgataagcatattcatgggaaggttat 28408481  T
Q  210 cattaatgtaataatttcttctgtttatttatctggtagtaaaacaaataaaacctcaggaagagacattagagaatttactatcttgaagtgtttc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28408482 cattaatgtaataatttcttctgtttatttatctggtagtaaaacaaataaaacctcaggaagagacattagagaatttactatcttgaagtgtttc 28408578  T

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