View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8987_low_10 (Length: 421)

Name: NF8987_low_10
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8987_low_10
NF8987_low_10
[»] chr4 (3 HSPs)
chr4 (23-421)||(52187515-52187913)
chr4 (297-380)||(36627264-36627347)
chr4 (291-380)||(35969266-35969355)
[»] chr2 (5 HSPs)
chr2 (23-401)||(38989801-38990168)
chr2 (26-376)||(43863129-43863466)
chr2 (26-383)||(43866595-43866941)
chr2 (26-244)||(43874407-43874625)
chr2 (295-376)||(43874280-43874361)
[»] chr3 (21 HSPs)
chr3 (26-214)||(777410-777598)
chr3 (26-91)||(476735-476800)
chr3 (227-374)||(7034096-7034239)
chr3 (26-380)||(481668-482017)
chr3 (290-382)||(777251-777343)
chr3 (276-379)||(8032346-8032449)
chr3 (31-92)||(5360351-5360411)
chr3 (297-368)||(7119797-7119868)
chr3 (26-85)||(8032627-8032686)
chr3 (126-177)||(476823-476874)
chr3 (26-91)||(1304007-1304072)
chr3 (117-174)||(8032539-8032596)
chr3 (268-333)||(13489997-13490062)
chr3 (145-177)||(1205143-1205175)
chr3 (145-177)||(1303927-1303959)
chr3 (297-368)||(7103232-7103303)
chr3 (298-381)||(7127009-7127092)
chr3 (276-311)||(24104122-24104157)
chr3 (26-85)||(24104343-24104402)
chr3 (132-178)||(13490192-13490238)
chr3 (228-354)||(476907-477028)
[»] chr7 (6 HSPs)
chr7 (236-378)||(32414567-32414707)
chr7 (297-366)||(30597242-30597311)
chr7 (291-383)||(6890132-6890224)
chr7 (304-355)||(6849709-6849760)
chr7 (322-370)||(6845153-6845201)
chr7 (132-177)||(6889903-6889948)
[»] scaffold0438 (2 HSPs)
scaffold0438 (276-374)||(6268-6369)
scaffold0438 (26-78)||(6029-6081)
[»] chr8 (8 HSPs)
chr8 (276-374)||(26291886-26291987)
chr8 (276-374)||(26305143-26305244)
chr8 (276-374)||(26338498-26338599)
chr8 (297-381)||(27700899-27700983)
chr8 (26-78)||(26291648-26291700)
chr8 (26-78)||(26304905-26304957)
chr8 (26-78)||(26338260-26338312)
chr8 (297-377)||(35336714-35336794)
[»] chr5 (9 HSPs)
chr5 (273-372)||(7022955-7023054)
chr5 (297-377)||(25070180-25070260)
chr5 (297-377)||(25128155-25128235)
chr5 (132-175)||(25070013-25070056)
chr5 (132-175)||(25127988-25128031)
chr5 (297-370)||(25216877-25216950)
chr5 (297-370)||(25281032-25281105)
chr5 (297-345)||(25102532-25102580)
chr5 (297-345)||(25161626-25161674)
[»] chr1 (2 HSPs)
chr1 (297-370)||(28927456-28927529)
chr1 (132-177)||(14288190-14288235)
[»] chr6 (7 HSPs)
chr6 (122-177)||(7174671-7174726)
chr6 (143-177)||(7114804-7114838)
chr6 (143-177)||(7119876-7119910)
chr6 (143-177)||(7123280-7123314)
chr6 (143-177)||(7117328-7117362)
chr6 (143-177)||(7129703-7129737)
chr6 (147-177)||(7140006-7140036)
[»] scaffold0525 (1 HSPs)
scaffold0525 (147-177)||(1952-1982)
[»] scaffold0210 (1 HSPs)
scaffold0210 (304-340)||(15277-15313)


Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Original strand, 52187515 - 52187913
Alignment:
Q  23 cgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggaga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187515 cgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggaga 52187614  T
Q  123 cttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52187615 cttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgagtttctgttcaaatactatcaaggtattttatattgtaccattgat 52187714  T
Q  223 gcttctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187715 gcttctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcc 52187814  T
Q  323 tgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccgaacttcatctatagatgacgacatggttggatt 421  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52187815 tgatttattgaaggttgagttccattccttgtgtaccttgaagtcactgaaaataaaaacggaccgaacttcatctatagatgacgacatggtgggatt 52187913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 36627347 - 36627264
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaa 380  Q
    ||||||||| |||| || |||||||||||||||||| |||||||| ||| ||| ||  ||| ||| |||||| || ||||||||    
T  36627347 attgcttagattctctccttagttcctgatttattggaggttgagctcccttctttcggtaacttgaagtcaatggaaataaaa 36627264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 35969266 - 35969355
Alignment:
Q  291 ttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaa 380  Q
    ||||||| || |||| |||| || |||||||||||| ||||  |||||||| ||||||| ||||||| ||| |||||  || ||||||||    
T  35969266 ttcttgactgtttagattctctccttagttcctgatatattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaa 35969355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 401
Target Start/End: Original strand, 38989801 - 38990168
Alignment:
Q  23 cgctatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggaga 122  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||  ||||| || |||||||||||||     
T  38989801 cgctatactccaaaactttttggcagcaagagtgttctctcttccatcaaacttgtaagtgttgatttaagatgtcgtttgatctcggagtcgcgggagt 38989900  T
Q  123 cttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgat 222  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| || ||||| ||||||||||| |||| ||    
T  38989901 cttcatcatttctactcaattggctggttgagctggctaatatcgaatcgttgactttttattcaaatactctcgaggtactttatattgtatcattaat 38990000  T
Q  223 gcttctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcc 322  Q
    ||  |||| |||||          ||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  38990001 gccactttatatat----------attttt-ttcaaaaatatgacttgcattaaactgatcgtaatacttcctgattgcttaggttctttctttatttcc 38990089  T
Q  323 tgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccgaacttcatctata 401  Q
    |||||||||||||| |||| ||||| |||||| || ||| ||||| ||||||||| ||||||||| |||| ||||||||    
T  38990090 tgatttattgaaggctgagctccatcccttgtataacttgaagtccctgaaaatagaaacggaccaaactacatctata 38990168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 376
Target Start/End: Complemental strand, 43863466 - 43863129
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 125  Q
    |||||||||||||||||||  ||||||| ||||||||||||||| |||||||||  |||  || |||  ||||| | ||||||| || |   | ||||||    
T  43863466 tatactccaaaactttttgcaagcaagaatgttctctcttctataaaacatgtagatatccatgtaacgtgttactggaacttgaaggcagagcagactt 43863367  T
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgatgct 225  Q
    | ||  |||||||||| ||| ||||||| ||||||||  | |||||||||||| ||| |||  ||||| | |||||| || ||| ||||  ||| | |||    
T  43863366 cgtctgttctactcaactggttggttgaacttgctaacgttgaatcattgactctctcttcgtatactcttaaggtacttcatactgtattattaacgct 43863267  T
Q  226 tctttttatattgtatttataatttttgatcaaaaa-taggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctg 324  Q
    ||||||||| ||||||||||||  | | |||||||| || ||||||||||||             |||| ||||||||||||||||||| ||||||| ||    
T  43863266 tctttttattttgtatttataacatct-atcaaaaaatatgacttgcattaa-------------cttcctgattgcttaggttctttccttagttcgtg 43863181  T
Q  325 atttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaat 376  Q
     |||||||||||| ||| ||| ||||||||||| ||| ||||||||||||||    
T  43863180 gtttattgaaggtagagctcccttccttgtgtaacttgaagtcactgaaaat 43863129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 383
Target Start/End: Complemental strand, 43866941 - 43866595
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 125  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||||||||| |||  || |||  ||||| | ||||| | |  |  |||| || |    
T  43866941 tatactccaaaactttttgcaagcaagaatgttctctcttctatcaaacatgtaaatatccatgtaacgtgttactggaactcgaaagcaagggaaacct 43866842  T
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgatgct 225  Q
    || |  |||||||||| ||| |||||| |||| | || ||||||||||||||| ||||||   ||||| |  |||||  ||| |||||| |||| ||| |    
T  43866841 caccggttctactcaactggttggttgtgcttaccaacatcgaatcattgactatctgtttgtatactcttgaggtacattagattgtatcattaatgat 43866742  T
Q  226 tcttttt-atattgtatttataatttttg-atcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcct 323  Q
     |||||| || |||| ||||||| || |  |  ||||||| ||||||||||||             |||| ||||||||||||| ||||| ||||||| |    
T  43866741 gcttttttattttgtgtttataacttctataaaaaaaatatgacttgcattaa-------------cttcctgattgcttaggtgctttccttagttcgt 43866655  T
Q  324 gatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacg 383  Q
    |||||||||||||||||||||| |||||||| || ||| ||||| |||||| ||||||||    
T  43866654 gatttattgaaggttgagttcccttccttgtttaacttgaagtcgctgaaattaaaaacg 43866595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 43874625 - 43874407
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 125  Q
    |||||||||||||||||||  ||||||| | ||||||||||||| |||||||||  |||  || |||  ||||| | ||||||| || |   | | ||||    
T  43874625 tatactccaaaactttttgcaagcaagaatcttctctcttctataaaacatgtagatatccatgtaacgtgttactggaacttgaaggcagagcaaactt 43874526  T
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgatgct 225  Q
    | || ||||| ||||| ||| |||| ||||||||||| ||||||||||||||| ||| |||  ||||| | |||||| || ||| |||| ||||  ||||    
T  43874525 cgtcgattctgctcaactggttggtcgagcttgctaacatcgaatcattgactctctcttcgtatactcttaaggtacttcatactgtatcattattgct 43874426  T
Q  226 tctttttatattgtattta 244  Q
      ||||||| |||||||||    
T  43874425 gatttttattttgtattta 43874407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 43874361 - 43874280
Alignment:
Q  295 tgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaat 376  Q
    ||||||||||||||||| | ||||||| | |||| |||| ||| ||| ||| ||||||||||| ||| ||||||| ||||||    
T  43874361 tgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcaccgaaaat 43874280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 777598 - 777410
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 125  Q
    |||| ||||||||||||||||||||||||  |||| | ||| ||||||||| ||| |||| ||||| | ||||||| ||||||| |||||  ||| ||||    
T  777598 tatattccaaaactttttgggagcaagagctttctttattccatcaaacatctaaatattcatttatggtgttattggaacttgaagtcggcggaaactt 777499  T
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgta 214  Q
    || || |||||||||||||||| |||||||||||||||||||||||| ||||  | | |||||||||| |  ||||| |||||||||||    
T  777498 caccacttctactcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactttatattgta 777410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 476735 - 476800
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 91  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  476735 tatattccaaaactttttgggagcaagagtgttatctcttctatcaaacatgtaagtattcattta 476800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 374
Target Start/End: Original strand, 7034096 - 7034239
Alignment:
Q  227 ctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgat 326  Q
    ||||||||||||| ||||||| |||| |||||   || ||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||     
T  7034096 ctttttatattgtgtttataaatttt-atcaa---tacgacttgcattaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaa 7034191  T
Q  327 ttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaa 374  Q
     ||| |||||||||| | | |||||||  || ||| |||| |||||||    
T  7034192 ctatcgaaggttgagcttccttccttgcataacttgaagttactgaaa 7034239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 380
Target Start/End: Original strand, 481668 - 482017
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaagatgttatttgaacttggagtcgcgggagactt 125  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||| |    ||||| ||     ||| ||  ||||||  |    
T  481668 tatattccaaaacttgttgggagcaagagcgttctctcttctatcaaacatgtaaatattcattcatcgcgttatatg-----gga-tcaggggagaaat 481761  T
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgactttctgttcaaatactatcaaggtattttatattgtaccattgatgct 225  Q
    |||||||| || |||| ||||||||||| |||||||||||||||||||||||  ||  ||    | |  | | |||| |||||||   |  ||| |||||    
T  481762 catcaattatattcaactggctggttgaacttgctaatatcgaatcattgaccatcaatttctttgcccttacggtactttatatctgaaaattaatgct 481861  T
Q  226 tctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgct--taggttctttctttagttcct 323  Q
      |||||| ||| ||||||||| |||| |||||||||| |||||||    |||||||| |||||||| ||| |||||  |||| | |||  ||| |||||    
T  481862 gttttttagattatatttataaatttttatcaaaaatatgacttgc----aactgatcctaatacttgttgtttgcttataggatattttcttatttcct 481957  T
Q  324 gatttattgaaggttgagttccattcc---ttgtgtaccttaaagtcactgaaaataaaa 380  Q
    |||||||||||| || || ||| ||||   ||||||| ||| ||||||||||||||||||    
T  481958 gatttattgaagattaagctcccttccttgttgtgtaacttgaagtcactgaaaataaaa 482017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 777343 - 777251
Alignment:
Q  290 cttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaac 382  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||  ||  || |||||||| ||| |||||| |||||||||||||    
T  777343 cttcttgattgcttaggttctttccttggttcctgatttattgaacgttgaactctcttacttgtgtaacttgaagtcattgaaaataaaaac 777251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 8032449 - 8032346
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaa 375  Q
    |||||||| ||||||||| ||||||||||||||||||| | |  |  ||||||||||| ||||||||||| ||||||| ||| ||| ||||||||||||     
T  8032449 aactgatcctaatacttcatgattgcttaggttctttcctgaaattatgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaat 8032350  T
Q  376 taaa 379  Q
    ||||    
T  8032349 taaa 8032346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 5360411 - 5360351
Alignment:
Q  31 tccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgatttaa 92  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||||||    
T  5360411 tccaaaactttttgggagcaagaccgttctc-cttctatcaaacatgtaaatattgatttaa 5360351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 7119797 - 7119868
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtca 368  Q
    |||||||||||||| || |||||||||||||||||||||||| || | | ||||||||||| ||| ||||||    
T  7119797 attgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtca 7119868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 8032686 - 8032627
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtatt 85  Q
    |||| ||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  8032686 tatattccgaaactttttgggagcaagaccgttctctcttctatcaaacatgtaaatatt 8032627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 476823 - 476874
Alignment:
Q  126 catcaattctactcaattggctggttgagcttgctaatatcgaatcattgac 177  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||||||||    
T  476823 catcaattctattcagctggctggttgaacttgctaatatcgaatcattgac 476874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 1304072 - 1304007
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtattgattta 91  Q
    |||| ||||||| || ||||||||||||  ||||||||||||||||||||| ||| |||| |||||    
T  1304072 tatattccaaaatttgttgggagcaagaccgttctctcttctatcaaacatctaactattcattta 1304007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 8032596 - 8032539
Alignment:
Q  117 gggagacttcatcaattctactcaattggctggttgagcttgctaatatcgaatcatt 174  Q
    |||||| | ||||||||||| |||| ||| ||||||| ||||||||||||||||||||    
T  8032596 gggagaatccatcaattctattcaactggttggttgatcttgctaatatcgaatcatt 8032539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 13490062 - 13489997
Alignment:
Q  268 ttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattga 333  Q
    |||||||||||||||  ||  |||||||| ||| |||||||||||| |||||||| ||||||||||    
T  13490062 ttgcattaaactgattctacaacttcttgtttgtttaggttctttccttagttccagatttattga 13489997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 1205143 - 1205175
Alignment:
Q  145 gctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||||    
T  1205143 gctggttgagcttgctaatatcgaatcattgac 1205175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 1303959 - 1303927
Alignment:
Q  145 gctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||||    
T  1303959 gctggttgagcttgctaatatcgaatcattgac 1303927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 7103303 - 7103232
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtca 368  Q
    ||||||||||| || || |||||||| ||||| ||||||||| | |||||||||||| ||| ||| ||||||    
T  7103303 attgcttaggtcctctccttagttccggatttgttgaaggttaaattccattccttgcgtaacttgaagtca 7103232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 7127009 - 7127092
Alignment:
Q  298 ttgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaa 381  Q
    |||| |||||||| || |||||||||| ||| ||||||||| |  ||||||||||| ||| ||| |||||||||| | ||||||    
T  7127009 ttgcataggttctctccttagttcctggtttgttgaaggttaaactccattccttgcgtaacttgaagtcactgagagtaaaaa 7127092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 24104157 - 24104122
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctt 311  Q
    |||||||| |||||||||||||||||||||||||||    
T  24104157 aactgatcctaatacttcttgattgcttaggttctt 24104122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 24104402 - 24104343
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgtaagtatt 85  Q
    |||| |||||||| |||||| ||||||| | |||||||||||||||||||| ||| ||||    
T  24104402 tatattccaaaacattttggaagcaagactcttctctcttctatcaaacatctaaatatt 24104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 13490238 - 13490192
Alignment:
Q  132 ttctactcaattggctggttgagcttgctaatatcgaatcattgact 178  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||||||||    
T  13490238 ttctgctcaactggctagttgagcttgctaatattgaatcattgact 13490192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 476907 - 477028
Alignment:
Q  228 tttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatt 327  Q
    |||||| ||||||||||||| |||| || ||||||| ||||||||    ||||||| |||||  ||||| ||| ||||| |||||   |  |||||||||    
T  476907 tttttagattgtatttataagtttt-ataaaaaatatgacttgca----actgatcctaatagatcttgtttgtttaggatcttttagtgtttcctgatt 477001  T
Q  328 tattgaaggttgagttccattccttgt 354  Q
    ||||||||||| || ||| ||||||||    
T  477002 tattgaaggttaagctcccttccttgt 477028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 236 - 378
Target Start/End: Original strand, 32414567 - 32414707
Alignment:
Q  236 ttgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaag 335  Q
    ||||||| |||| ||||| ||||||||| || |||||| ||| ||||| |||| |||| |||||| |||||||||||| || ||||||||||||||||||    
T  32414567 ttgtattaataaattttg-tcaaaaatatgatttgcat-aaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaag 32414664  T
Q  336 gttgagttccattccttgtgtaccttaaagtcactgaaaataa 378  Q
    ||  |||| | ||||||||||| ||| ||||||||||||||||    
T  32414665 gtgaagttgccttccttgtgtaacttgaagtcactgaaaataa 32414707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 30597311 - 30597242
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagt 366  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30597311 attgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagt 30597242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 6890132 - 6890224
Alignment:
Q  291 ttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacg 383  Q
    |||||||||| | ||||||| ||   ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| | | ||||||||    
T  6890132 ttcttgattgatcaggttctctcgaaagttcctgatttattgaaggttgagtttcattccttgtgtagcttgaagtcacttagagtaaaaacg 6890224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 6849709 - 6849760
Alignment:
Q  304 aggttctttctttagttcctgatttattgaaggttgagttccattccttgtg 355  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  6849709 aggttctctccttagttcctgatttattgaaggttgaattccattccttgtg 6849760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 6845153 - 6845201
Alignment:
Q  322 ctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 370  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||    
T  6845153 ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcact 6845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 6889903 - 6889948
Alignment:
Q  132 ttctactcaattggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||| ||||| ||||||||||| |||||||||||| ||||||||||    
T  6889903 ttcttctcaactggctggttgaacttgctaatatcaaatcattgac 6889948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 6268 - 6369
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 372  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  6268 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgacgatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 6367  T
Q  373 aa 374  Q
    ||    
T  6368 aa 6369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 6029 - 6081
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 78  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  6029 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 6081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 26291886 - 26291987
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 372  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26291886 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26291985  T
Q  373 aa 374  Q
    ||    
T  26291986 aa 26291987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 26305143 - 26305244
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 372  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26305143 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26305242  T
Q  373 aa 374  Q
    ||    
T  26305243 aa 26305244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 26338498 - 26338599
Alignment:
Q  276 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 372  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26338498 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26338597  T
Q  373 aa 374  Q
    ||    
T  26338598 aa 26338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 27700983 - 27700899
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaa 381  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||   |||||| |||| ||| ||||| |||||| ||||||    
T  27700983 attgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttccttatgtaacttgaagtcgctgaaagtaaaaa 27700899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 26291648 - 26291700
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 78  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26291648 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26291700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 26304905 - 26304957
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 78  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26304905 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 26338260 - 26338312
Alignment:
Q  26 tatactccaaaactttttgggagcaagagtgttctctcttctatcaaacatgt 78  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||||||    
T  26338260 tatattccaaaactttttgggagcaagaccgctctctcttctatcaaacatgt 26338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 35336714 - 35336794
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 377  Q
    |||||||||||||| || |||||||||||||||||| ||||| || ||| ||| ||||||| ||| |||||| || |||||    
T  35336714 attgcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgtaacttgaagtcattggaaata 35336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 7022955 - 7023054
Alignment:
Q  273 ttaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactga 372  Q
    |||||| |||| |||| | |||||||| ||||||||||||| ||||||||| | ||||||| || |||| ||| ||||||||||| ||| ||||||||||    
T  7022955 ttaaaccgatcctaattcgtcttgatttcttaggttctttccttagttcctaacttattgatggctgagctcccttccttgtgtaacttgaagtcactga 7023054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 25070180 - 25070260
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 377  Q
    |||| ||||||||| || |||||||| ||||| |||| ||||||||||| | |||||| || ||| |||||||| ||||||    
T  25070180 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25070260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 25128155 - 25128235
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 377  Q
    |||| ||||||||| || |||||||| ||||| |||| ||||||||||| | |||||| || ||| |||||||| ||||||    
T  25128155 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 25070013 - 25070056
Alignment:
Q  132 ttctactcaattggctggttgagcttgctaatatcgaatcattg 175  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  25070013 ttctactcaactggctggttgagattgctaatatcaaatcattg 25070056  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 25127988 - 25128031
Alignment:
Q  132 ttctactcaattggctggttgagcttgctaatatcgaatcattg 175  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  25127988 ttctactcaactggctggttgagattgctaatatcaaatcattg 25128031  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 25216877 - 25216950
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 370  Q
    |||| ||||||||| ||  |||||||  ||||||||||||||||||||| | |||||| || ||| ||||||||    
T  25216877 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25216950  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 25281032 - 25281105
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 370  Q
    |||| ||||||||| ||  |||||||  ||||||||||||||||||||| | |||||| || ||| ||||||||    
T  25281032 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25281105  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 25102532 - 25102580
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttcc 345  Q
    |||| ||||||||| ||  |||||||| |||||||||||||||||||||    
T  25102532 attgattaggttctctccctagttcctaatttattgaaggttgagttcc 25102580  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 25161626 - 25161674
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttcc 345  Q
    |||| ||||||||| ||  |||||||| |||||||||||||||||||||    
T  25161626 attgattaggttctctccctagttcctaatttattgaaggttgagttcc 25161674  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 28927529 - 28927456
Alignment:
Q  297 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 370  Q
    |||| |||||||||  | ||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||    
T  28927529 attgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcact 28927456  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 14288235 - 14288190
Alignment:
Q  132 ttctactcaattggctggttgagcttgctaatatcgaatcattgac 177  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||||    
T  14288235 ttctattcaattggctggttgagcttggtaatattgaatcattgac 14288190  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 7174726 - 7174671
Alignment:
Q  122 acttcatcaattctactcaattggctggttgagcttgctaatatcgaatcattgac 177  Q
    ||||||| |||||||| ||| ||| ||||||||||||||||||| |||||||||||    
T  7174726 acttcattaattctacacaactggttggttgagcttgctaatattgaatcattgac 7174671  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7114838 - 7114804
Alignment:
Q  143 tggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||||||    
T  7114838 tggctggttgagcttgctaatatcgaatcattgac 7114804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7119910 - 7119876
Alignment:
Q  143 tggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||||||    
T  7119910 tggctggttgagcttgctaatatcgaatcattgac 7119876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7123314 - 7123280
Alignment:
Q  143 tggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||||||    
T  7123314 tggctggttgagcttgctaatatcgaatcattgac 7123280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7117362 - 7117328
Alignment:
Q  143 tggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||| ||||||||||||||||    
T  7117362 tggctggttgagcttgcttatatcgaatcattgac 7117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7129737 - 7129703
Alignment:
Q  143 tggctggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||| ||||||||||||||||    
T  7129737 tggctggttgagcttgcttatatcgaatcattgac 7129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 7140036 - 7140006
Alignment:
Q  147 tggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||    
T  7140036 tggttgagcttgctaatatcgaatcattgac 7140006  T

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Target: scaffold0525 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 177
Target Start/End: Complemental strand, 1982 - 1952
Alignment:
Q  147 tggttgagcttgctaatatcgaatcattgac 177  Q
    |||||||||||||||||||||||||||||||    
T  1982 tggttgagcttgctaatatcgaatcattgac 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 15313 - 15277
Alignment:
Q  304 aggttctttctttagttcctgatttattgaaggttga 340  Q
    ||||||| || ||||||||||||||||||||||||||    
T  15313 aggttctctccttagttcctgatttattgaaggttga 15277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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