View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_low_12 (Length: 417)
Name: NF8987_low_12
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 1002731 - 1003112
Alignment:
| Q |
18 |
aaaaccgactttctgtttgatttttagatctagaatgtcaaatctctttccttcatgaaatatatggagatgttgaagctgcgctacatggttcaatgct |
117 |
Q |
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| T |
1002731 |
aaaactgactttatgtttgatttttagatctagaatttcaaatttctttccttcatgaaatatatggagatgctggagttgcgctacatggttcaatgct |
1002830 |
T |
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| Q |
118 |
ataatacactgtagacttgattttactgaaatttttaatattattattggattctttacaaaacttttcggacaaatgacatttttattactgtgaacag |
217 |
Q |
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| T |
1002831 |
ataatacactgtagacttgatttgactgaaatttttaattttattattggattctttacagaacttttcggacaaatgacatttttattactgtgaacag |
1002930 |
T |
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| Q |
218 |
agccacatattttgctccgttgatagctcagattaggagacaaagaaaaaagcttagaatgaaattgaacacttttaacccattgacatttgaggcaatg |
317 |
Q |
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| T |
1002931 |
agccacatattttgctctgttgatagctcagattaggagacgaagaaaaaagcttaacatgaaattgaacagttttaacccattgacatttgaggcaatg |
1003030 |
T |
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| Q |
318 |
gttggtcatcatattgtaagtaaaaatttgttttctttagtataataaactaaataatttccaacattggttcaatatgaca |
399 |
Q |
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| T |
1003031 |
gttggtcatcatattgtaagttaaaatttgttttctttagtataataaactaaataatttccaaaattggttcaatatgaca |
1003112 |
T |
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