View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8987_low_15 (Length: 407)
Name: NF8987_low_15
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 47995972 - 47996277
Alignment:
| Q |
12 |
tggtgttggagctgcaaatcacattccacacttgcctaagccaaacaacatcaacgcgaatggaggaaatcatattgcatcgaggcaaaaacaatcaact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47995972 |
tggtgttggagctgcaaatcacattccatacttgcctaagccaaacaacatcaacacgaatggaggaaatcatattgcatcgaggcaaaaacaatcaaat |
47996071 |
T |
|
| Q |
112 |
ttggggtataaaagcaataccgaggtgaaaaagatgggtaagattgacgaggatcaaccttgtcattttgagaacaatcaaattggtttcaaaaccaatc |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47996072 |
ttggggtataaaagcaatactgaggtgaaaaagatgggtaagattgacgaggatcaaccttgtcattttgagagcaatcaaattggtttcaaaaccaatc |
47996171 |
T |
|
| Q |
212 |
ttttgcatttgattccaacaagaaggagcagtgctgccaagaatccaaacctacgtatatataacatcatcaatgaagattgaagggtgacatgaagaaa |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47996172 |
ttttgcatttgattccatcaagaaggagcagtgctgccaagaatccaaacgtacgtatatataacatcatcaatgaagattgaagggtgacatgaagaaa |
47996271 |
T |
|
| Q |
312 |
ataaag |
317 |
Q |
| |
|
|||||| |
|
|
| T |
47996272 |
ataaag |
47996277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 47996316 - 47996364
Alignment:
| Q |
347 |
ggtgagtgagcatgcacgtgctagaataatttgagcgattatcaagatc |
395 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
47996316 |
ggtgagtgagcatgcacttgctggaataatttgagcgattatcaagatc |
47996364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University