View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_low_23 (Length: 299)
Name: NF8987_low_23
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 37600460 - 37600731
Alignment:
| Q |
16 |
catcaccacaccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccgccgaccacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
37600460 |
catcaccacaccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccaccaaccacc |
37600559 |
T |
|
| Q |
116 |
gccgcgctgcccctcttctttcccccgacgttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctctatctaaaatctggtagta |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37600560 |
gccgcgctgcccctcttctttcccc-gacgttgaggtacgtcgccggcaatcatcatggagatccgttcgtcctcactctctatctaaaatctggtagta |
37600658 |
T |
|
| Q |
216 |
ttcaccggcgttggtaacagagacgtcgtcgttggtcatcaaggagtctgtgtgcattgtattatgttgatgt |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37600659 |
ttcaccggcgttggtaacagagacgtcgtcgttggtcatcatggagtctgtgtgcattgtattatgttgatgt |
37600731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 27661261 - 27660997
Alignment:
| Q |
16 |
catcaccacaccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccgccgaccacc |
115 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
27661261 |
catcaccacaccttcca-atcctttctcccccatgactctgtcccctatcaccaccaccatcgtttctctgcctctcgccactatcaacc-------acc |
27661170 |
T |
|
| Q |
116 |
gccgcgctgcccctcttctttcccccgacgttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctctatctaaaatctggtagta |
215 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
27661169 |
accgcgctgcccctcttttttcccccgacgttgaggtacgtcgctggccatcatcatggagatccgttcgtcctcactctctatctgaaatatggtagta |
27661070 |
T |
|
| Q |
216 |
ttcaccggcgttggtaacagagacgtcgtcgttggtcatcaaggagtctgtgtgcattgtattatgttgatgt |
288 |
Q |
| |
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||||||||||||||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27661069 |
ttcaccggcgttggtaacagagatgttgtcaccggtcgtcatggagtctgtgtgcattgtattatgttgatgt |
27660997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 4096611 - 4096713
Alignment:
| Q |
146 |
ttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctct--atctaaaatctggtagtattcaccggcgttggtaacagagacgtcg |
243 |
Q |
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||||||||||||||||||| |||||||||| | |||| ||| |||||||||| || |||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
4096611 |
ttgaggtacgtcaccggccatcatcatggaaaaccgtgcgttctcactctctccattcggaatctggtcgtattcaccagcgttggtaacggagacgtcg |
4096710 |
T |
|
| Q |
244 |
tcg |
246 |
Q |
| |
|
||| |
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|
| T |
4096711 |
tcg |
4096713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 52916129 - 52916231
Alignment:
| Q |
146 |
ttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctct--atctaaaatctggtagtattcaccggcgttggtaacagagacgtcg |
243 |
Q |
| |
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||||||||||||||||||| |||||||||| | |||| ||| |||||||||| || |||||||| ||||||||| |||||| |||| ||||||||| |
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| T |
52916129 |
ttgaggtacgtcaccggccatcatcatggaaaaccgtgcgttctcactctctccattcggaatctggtcgtattcaccagcgttgataacggagacgtcg |
52916228 |
T |
|
| Q |
244 |
tcg |
246 |
Q |
| |
|
||| |
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|
| T |
52916229 |
tcg |
52916231 |
T |
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