View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8987_low_24 (Length: 288)

Name: NF8987_low_24
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8987_low_24
NF8987_low_24
[»] chr6 (20 HSPs)
chr6 (1-269)||(6596544-6596812)
chr6 (1-196)||(10579426-10579620)
chr6 (3-251)||(19632653-19632901)
chr6 (4-201)||(7131853-7132050)
chr6 (4-267)||(6395082-6395342)
chr6 (4-176)||(7119375-7119547)
chr6 (4-249)||(6426729-6426974)
chr6 (135-267)||(7993782-7993914)
chr6 (107-200)||(6410345-6410438)
chr6 (4-89)||(6589119-6589204)
chr6 (107-251)||(6602821-6602965)
chr6 (1-96)||(6432376-6432471)
chr6 (4-99)||(6410224-6410319)
chr6 (4-95)||(6423435-6423526)
chr6 (158-267)||(6432541-6432650)
chr6 (136-200)||(6594270-6594334)
chr6 (215-267)||(8913669-8913721)
chr6 (64-99)||(6416244-6416279)
chr6 (4-99)||(14820908-14821003)
chr6 (62-94)||(6585073-6585105)
[»] chr1 (7 HSPs)
chr1 (111-267)||(33160850-33161006)
chr1 (118-267)||(29658553-29658702)
chr1 (118-267)||(29691068-29691217)
chr1 (118-267)||(29718580-29718729)
chr1 (117-267)||(30827447-30827597)
chr1 (133-256)||(19468116-19468239)
chr1 (1-99)||(19468285-19468383)
[»] chr3 (3 HSPs)
chr3 (1-99)||(51764226-51764324)
chr3 (1-99)||(13470518-13470616)
chr3 (1-91)||(514519-514609)
[»] chr4 (7 HSPs)
chr4 (135-247)||(3438269-3438381)
chr4 (135-257)||(55908335-55908457)
chr4 (134-251)||(53761401-53761518)
chr4 (4-99)||(21834164-21834259)
chr4 (180-246)||(1600816-1600882)
chr4 (135-251)||(547283-547399)
chr4 (113-170)||(10634131-10634188)
[»] chr2 (1 HSPs)
chr2 (135-257)||(1037271-1037393)
[»] chr7 (6 HSPs)
chr7 (133-257)||(10169746-10169870)
chr7 (133-257)||(10177271-10177395)
chr7 (138-267)||(15091751-15091880)
chr7 (1-99)||(10614808-10614906)
chr7 (133-167)||(10167380-10167414)
chr7 (65-99)||(15091937-15091971)
[»] chr5 (4 HSPs)
chr5 (110-200)||(20477749-20477839)
chr5 (111-251)||(32267818-32267958)
chr5 (135-267)||(41889151-41889283)
chr5 (219-267)||(12846044-12846092)
[»] scaffold0262 (1 HSPs)
scaffold0262 (135-265)||(287-417)
[»] chr8 (2 HSPs)
chr8 (1-90)||(17627851-17627940)
chr8 (135-194)||(17627729-17627788)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 6596812 - 6596544
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccag 100  Q
    |||||||| || ||||||||||||||  |||||||  |||||| || |||| |  |||||||||||||||||||||| |||||||||||||||||| |||    
T  6596812 tgcaaattaggaaaaaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggtatacatcag 6596713  T
Q  101 atttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 200  Q
    | ||| |||||||||   ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6596712 aattctctacactctccgtcccaatagctgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctgattctgtgag 6596613  T
Q  201 ccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgtgt 269  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6596612 ccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgtgt 6596544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10579620 - 10579426
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10579620 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagattttaattgagg-tatacaccag 10579522  T
Q  101 atttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 196  Q
    | ||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579521 aattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 10579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 19632653 - 19632901
Alignment:
Q  3 caaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagat 102  Q
    ||||||||| ||||| ||||| |||||| ||||| ||||||||| ||||  | |||||| ||||||||||||||| |||||||||||||||||||||       
T  19632653 caaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacaccaata 19632752  T
Q  103 ttcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagcc 202  Q
    ||| ||||||| | ||| | ||||| ||  ||||||||||||||||||||||| ||||||||||| || ||||| |||||||| | | |||||||||||     
T  19632753 ttctctacactttcttttcaaatagatgcgttttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaatgataattctgtgagct 19632852  T
Q  203 ttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaaga 251  Q
    |  ||||   ||||||||| ||||| |||||||||| | | ||||||||    
T  19632853 tccaacagtcattaaggttgatagacaccaaatcactatgcaacaaaga 19632901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 7131853 - 7132050
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatt 103  Q
    ||||||||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| |    
T  7131853 aaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaat 7131952  T
Q  104 tcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagc 201  Q
    || ||||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| ||||| ||| |||||||| |||||||||||    
T  7131953 tccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagc 7132050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 6395082 - 6395342
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatt 103  Q
    ||||||||||||| |||||  |||||||| || ||||||||   |||| |  ||||| |||||||||||||||| ||||| ||||||||||||||||| |    
T  6395082 aaattggggaaaatggaagtaaacattatgattatttcatctattaaccagtaatttgtacccaaatagagagagtttaactgagggtatacaccagaat 6395181  T
Q  104 tcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagcct 203  Q
     | | ||| ||| ||||||||||  ||| ||||||||||| |||||  ||||| ||||||| ||||| ||||| ||||| |||| || |||||||||       
T  6395182 gcccaacagtctctttcccaatacatgtgttttccattttaatctcggtaagcaaaggacagtttctaacgagtgaaaaaaaggttgtttctgtgag--- 6395278  T
Q  204 tgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
      ||| || |  |||||||||||| ||||||| |||||||||||||||||| ||  ||||||||    
T  6395279 ataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt 6395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 7119375 - 7119547
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatt 103  Q
    ||||||||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| |    
T  7119375 aaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaat 7119474  T
Q  104 tcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag 176  Q
    || ||||||||| |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| |||||    
T  7119475 tccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgag 7119547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 6426729 - 6426974
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatt 103  Q
    ||||||||||||| ||||||  ||||||| || |||||||||| |||| ||||||||||||||| ||||||||| || |||||||||||||||||||| |    
T  6426729 aaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaattgagggtatacaccagaat 6426828  T
Q  104 tcactacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagcct 203  Q
       ||| | | ||| ||||||| | |||   ||||||||| ||||||||||  |||||||| ||||| || || |||||||| | || |||||||||       
T  6426829 gttctaaagtatttatcccaattgatgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaatgttgtttctgtgagatg 6426928  T
Q  204 tgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaa 249  Q
       ||||| | ||||||||||||| ||||| | ||||| |||||||    
T  6426929 atgacaaccactaaggtttatagacaccaacttaccaaaaaacaaa 6426974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 7993914 - 7993782
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    |||||||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||||||||| |   |||   | ||||||||||||| ||||||    
T  7993914 ttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaa 7993815  T
Q  235 tcaccaagaaacaaagagaactcggcaacatgt 267  Q
    ||||||||||  || || ||||| |||||||||    
T  7993814 tcaccaagaagtaatgacaactcagcaacatgt 7993782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 6410345 - 6410438
Alignment:
Q  107 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 200  Q
    ||||||||| ||||||||||  |||| ||| ||||||||||||| |||| |||||||||||||| ||||| ||||||  |||| ||||||||||    
T  6410345 ctacactctctttcccaatacttgttcttttcattttgatctcattaagtgaaggacaatttctaacgagtgaaaactgggctaattctgtgag 6410438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 6589204 - 6589119
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagg 89  Q
    ||||||||||||| |||||| |||||||| ||  || |||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  6589204 aaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 6602965 - 6602821
Alignment:
Q  107 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttga 206  Q
    ||||| ||| |||||||||| |||| | ||||||||||||||||||||| |||||||| ||| | || || |||||||||| | ||||||||||    ||    
T  6602965 ctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtgaggtagga 6602866  T
Q  207 acaacgattaaggtttatagaaaccaaatcaccaagaaacaaaga 251  Q
    |||   | ||||||||||||| ||||||| |  ||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaattagtaagaaacaaaga 6602821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6432376 - 6432471
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtataca 96  Q
    |||||||||||||||| |||||| |||||||| ||| ||||||  | |||| |||||||   ||||||||||||||| ||||| ||||||||||||    
T  6432376 tgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactgagggtataca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 6410224 - 6410319
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||| |||| |||||| ||||  || || |||||||||| |||||||| |||   | ||||||||||||| |||||||||||||||||||||    
T  6410224 aaattgggaaaaatggaagcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattgagggtatacacca 6410319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 6423435 - 6423526
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatac 95  Q
    ||||| ||||||| |||||| |||||||| || |||||||||| |||| | ||| |   ||||||||||||||| |||||||||||||||||    
T  6423435 aaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaattgagggtatac 6423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 6432541 - 6432650
Alignment:
Q  158 aaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactc 257  Q
    ||||||| ||||  ||||| ||||||| |||||||||||||||   |  ||||  | ||||||||||||| ||||||||| |||||||||||||  || |    
T  6432541 aaggacagtttccaacgagtgaaaacagggctgattctgtgagatatcgacaattactaaggtttatagacaccaaatcagcaagaaacaaagacgaccc 6432640  T
Q  258 ggcaacatgt 267  Q
    ||||||||||    
T  6432641 ggcaacatgt 6432650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 6594334 - 6594270
Alignment:
Q  136 tccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 200  Q
    ||||||||||| ||||||||  |||||||| |||| || || |||||||| ||||||||||||||    
T  6594334 tccattttgatatcactaagtaaaggacaacttctaacaagtgaaaacaaagctgattctgtgag 6594270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 8913721 - 8913669
Alignment:
Q  215 taaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||    
T  8913721 taaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgt 8913669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 6416244 - 6416279
Alignment:
Q  64 cccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||||||||| |||||||||||||||||||||    
T  6416244 cccaaatagagagactttaattgagggtatacacca 6416279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 14820908 - 14821003
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    ||||| ||||||| ||||||  |||  || || |||||||||  |||| |||||||   ||||||||||||||| || ||||||||||||||||||    
T  14820908 aaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgagggtatacacca 14821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 6585105 - 6585073
Alignment:
Q  62 tacccaaatagagagattttaattgagggtata 94  Q
    |||||||||||||||| ||||||||||||||||    
T  6585105 tacccaaatagagagactttaattgagggtata 6585073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 33160850 - 33161006
Alignment:
Q  111 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 210  Q
    ||||| ||||||||||| |||   |||||||||||| |||||||| |||||||| ||| | || || |||||||| |||||||||||||||||  ||||     
T  33160850 actctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacat 33160949  T
Q  211 cgattaaggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    | ||||||||||||||| |||||| || |||||||||||||||||||||||||||||    
T  33160950 ccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgt 33161006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 29658702 - 29658553
Alignment:
Q  118 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 217  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29658702 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29658603  T
Q  218 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  29658602 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 29691217 - 29691068
Alignment:
Q  118 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 217  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29691217 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29691118  T
Q  218 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  29691117 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 29718729 - 29718580
Alignment:
Q  118 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaa 217  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| | | |||    
T  29718729 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaa 29718630  T
Q  218 ggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  29718629 ggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgt 29718580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 30827447 - 30827597
Alignment:
Q  117 tttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgatta 216  Q
    ||||||||||| ||| |   |||||||||| ||| |||| |||||||||||| | ||||| |||||||| ||||||||||| ||| |  |||| ||| ||    
T  30827447 tttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaacgagcgaaaacaaagctgattctgttagcttccaacatcgagta 30827546  T
Q  217 aggtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    ||||||||||| || |||| |  ||||| ||||||||| ||||||||||||    
T  30827547 aggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgt 30827597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 256
Target Start/End: Complemental strand, 19468239 - 19468116
Alignment:
Q  133 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 232  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||||      |||   | ||||||||||||| || |    
T  19468239 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacacta 19468140  T
Q  233 aatcaccaagaaacaaagagaact 256  Q
    ||||||||||||||||||| ||||    
T  19468139 aatcaccaagaaacaaagacaact 19468116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19468383 - 19468285
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    ||||||||||| |||| |||||| |||||||| ||  ||||||| | |||| |||||||   | |||| |||||| | |||||||||||| ||||||||    
T  19468383 tgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaattgagggaatacacca 19468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 51764324 - 51764226
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||||||||||| |||||| |||||||| ||  ||||||||| |||| ||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  51764324 tgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagactttaattgagggtatacacca 51764226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13470616 - 13470518
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||||||||||  |||||| |||||||| ||   |||||||| |||| ||  |||| | |||||||||||||| |||||||||||||||||||||    
T  13470616 tgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagactttaattgagggtatacacca 13470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 514609 - 514519
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggt 91  Q
    |||||||| |||||||  ||||| ||||||||||   ||||||| | |||  |||||||   | |||||||||||||||||||||||||||    
T  514609 tgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattgagggt 514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 3438381 - 3438269
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    ||||||||| ||||||||||| ||||||||||| || | ||| ||||| |||||| ||| ||||||| | ||||||  | ||||||||||||| ||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  235 tcaccaagaaaca 247  Q
    |||||| ||||||    
T  3438281 tcaccatgaaaca 3438269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 55908457 - 55908335
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    ||||||||||| |||| |||| ||||||||||| || ||||| | ||||| ||| || ||||||||| |   |||   | ||||||||||||| ||||||    
T  55908457 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 55908358  T
Q  235 tcaccaagaaacaaagagaactc 257  Q
    ||||||||||||||||| |||||    
T  55908357 tcaccaagaaacaaagacaactc 55908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 53761518 - 53761401
Alignment:
Q  134 tttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaa 233  Q
    |||||||||||||||||||||| |||||||| ||| |  | || | |||||||||  ||| ||||| | |  |||||||| |||||||||| || |||||    
T  53761518 tttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaaggccaattttgtgatcttataacaacgactaaggtttatggacaccaa 53761419  T
Q  234 atcaccaagaaacaaaga 251  Q
    ||||||||||| ||||||    
T  53761418 atcaccaagaagcaaaga 53761401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 21834259 - 21834164
Alignment:
Q  4 aaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||||||||  ||||| |||||||| ||  ||||||||  |||| ||||||| |  |||||| ||||||| |||||||||||||| ||||||    
T  21834259 aaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattgagggtacacacca 21834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 1600816 - 1600882
Alignment:
Q  180 aaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatcaccaagaaac 246  Q
    |||||||||||||||||||||| |   |||   | ||||||||||||||||||||||||||||||||    
T  1600816 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 1600882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 547283 - 547399
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    ||||||||||||||||||||| |||| |||||| || ||||| | |||||||||| | | ||||||      |||  || ||||||||||| |  |||||    
T  547283 ttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaa 547382  T
Q  235 tcaccaagaaacaaaga 251  Q
    |||||||||||||||||    
T  547383 tcaccaagaaacaaaga 547399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 10634188 - 10634131
Alignment:
Q  113 tctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttct 170  Q
    |||||||||||||||  ||   ||||||||||||||||||||| |||||||| |||||    
T  10634188 tctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtttct 10634131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 1037393 - 1037271
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    ||||||||||| |||| |||| ||||||||||| || ||||| | ||||| ||| || ||||||||| |   |||   | ||||||||||||| ||||||    
T  1037393 ttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 1037294  T
Q  235 tcaccaagaaacaaagagaactc 257  Q
    ||||||||||||||||| |||||    
T  1037293 tcaccaagaaacaaagacaactc 1037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 10169870 - 10169746
Alignment:
Q  133 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 232  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||| |    ||||  || ||||||||| ||| || |    
T  10169870 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacacta 10169771  T
Q  233 aatcaccaagaaacaaagagaactc 257  Q
    ||||||||| ||||||||| |||||    
T  10169770 aatcaccaataaacaaagaaaactc 10169746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 10177395 - 10177271
Alignment:
Q  133 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaacca 232  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||| |    ||||  || ||||||||| ||| || |    
T  10177395 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacacta 10177296  T
Q  233 aatcaccaagaaacaaagagaactc 257  Q
    ||||||||| ||||||||| |||||    
T  10177295 aatcaccaataaacaaagaaaactc 10177271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 15091880 - 15091751
Alignment:
Q  138 cattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaatca 237  Q
    ||||||||| ||| ||||||||||||| |||||  |||| |||||||||| || |||||||||  |   ||||  ||||||||||||||| ||||||| |    
T  15091880 cattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaatta 15091781  T
Q  238 ccaagaaacaaagagaactcggcaacatgt 267  Q
    | |||||| | |||||| ||  ||||||||    
T  15091780 ctaagaaatagagagaaatcaacaacatgt 15091751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10614808 - 10614906
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 99  Q
    |||||||||||||||  |||||| ||| |||||||   |||||| | |||| |   |||| | |||||||||||||| |||||||||||||||||||||    
T  10614808 tgcaaattggggaaattggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaatagagagactttaattgagggtatacacca 10614906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 10167414 - 10167380
Alignment:
Q  133 ttttccattttgatctcactaagcgaaggacaatt 167  Q
    ||||||||||||||||||||||| |||||||||||    
T  10167414 ttttccattttgatctcactaagtgaaggacaatt 10167380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 15091971 - 15091937
Alignment:
Q  65 ccaaatagagagattttaattgagggtatacacca 99  Q
    ||||||||||||| |||||||||||||||||||||    
T  15091971 ccaaatagagagactttaattgagggtatacacca 15091937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 20477839 - 20477749
Alignment:
Q  110 cactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 200  Q
    |||||| |||||| |||| ||| | ||||||||||||||||| ||| |||||||| ||||| || || ||| |||||||| ||||||||||    
T  20477839 cactctctttcccgatagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgag 20477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 32267818 - 32267958
Alignment:
Q  111 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 210  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||| ||||| || ||  | | |||   ||| |||||||||||||| ||| ||||||||    
T  32267818 actctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggagaacaaagaaggctgattctgtaagcattgaacaa 32267917  T
Q  211 cgattaaggtttatagaaaccaaatcaccaagaaacaaaga 251  Q
     || | |  ||||||||  |||||||| |||||||| ||||    
T  32267918 tgagtcaaatttatagattccaaatcaacaagaaacgaaga 32267958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 41889283 - 41889151
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagg-gaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaa 233  Q
    ||||||||||||  ||| ||| ||||||||||| |||| || | | ||| || ||||||||||||||  | |||||| |||| | ||||||||| |||||    
T  41889283 ttccattttgataacacaaagtgaaggacaatt-cttaagaagtgcaaagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaa 41889185  T
Q  234 atcaccaagaaacaaagagaactcggcaacatgt 267  Q
    ||||||||||||  |||| |||||  ||||||||    
T  41889184 atcaccaagaaatgaagacaactccacaacatgt 41889151  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 12846044 - 12846092
Alignment:
Q  219 gtttatagaaaccaaatcaccaagaaacaaagagaactcggcaacatgt 267  Q
    ||||||||||| |||||||||||||| |||||| ||||  |||||||||    
T  12846044 gtttatagaaatcaaatcaccaagaagcaaagataacttagcaacatgt 12846092  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 287 - 417
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgattaaggtttatagaaaccaaa 234  Q
    |||||||||||||||| |||| |||||| |||| || ||||| | ||||| || ||| | ||||||| |   |||   | |||| |||||||| ||||||    
T  287 ttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaa 386  T
Q  235 tcaccaagaaacaaagagaactcggcaacat 265  Q
    || |||||||||||||| ||||| |||||||    
T  387 tcgccaagaaacaaagacaactctgcaacat 417  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 17627940 - 17627851
Alignment:
Q  1 tgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgaggg 90  Q
    |||||||||||||||| |||||| |||||| | ||  ||||||| | || | |||||||   | ||||||||||||||||||||||||||    
T  17627940 tgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgaggg 17627851  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 17627788 - 17627729
Alignment:
Q  135 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattc 194  Q
    ||||||||| |||||| |||| |||||||| || || ||||| |||||||||||||||||    
T  17627788 ttccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattc 17627729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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