View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_low_28 (Length: 273)
Name: NF8987_low_28
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_28 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 3083193 - 3083438
Alignment:
| Q |
16 |
caagaggaactttcatttggtttgagaattaaaggttacttacctcagatttatagtagctatttaactgcattctctctgagcaaacaatggctacata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083193 |
caagaggaactttcatttggtttgagaattaaaggttacttacctcagatttatagtagctatttaactgcattctctctgagcaaacaatggctacata |
3083292 |
T |
|
| Q |
116 |
tctcagatttaaatggtttttggctattgtttaatagagattattaactgaaacttgaaattaacttgatagttgaagagtttcttcctttgtttgaatt |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
3083293 |
tctcaaatttaaatggtttttggctattgtttaatagagattattaactgaaacttgaaattgacttgatagttgaagagtttcttcctttgtttaaatt |
3083392 |
T |
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| Q |
216 |
tcaattta--ctcctttttatttatcatctcctcacaaggggttgt |
259 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3083393 |
tcaatttactctcctttttatttatcatctcctcacaaggggttgt |
3083438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 38403983 - 38404150
Alignment:
| Q |
24 |
actttcatttggtttgagaattaaaggttacttacctcag-atttatagtagctatttaactgcattctctctgagcaaacaatggctacatatctcaga |
122 |
Q |
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||||||| || | ||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |
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| T |
38403983 |
actttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcattctctctgagcaaacaatggctacatgtctcata |
38404082 |
T |
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| Q |
123 |
tttaaatggtttttggctattgtttaatagagatt------attaactgaaacttgaaattaacttga |
184 |
Q |
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| T |
38404083 |
tttacatggtttttggctattgtttaatagagattctataaattaactaaaacttgaaattaacttga |
38404150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 40909942 - 40910187
Alignment:
| Q |
16 |
caagaggaactttcatttggtttgagaattaaaggttacttacctcagatttatagtagctatttaactgcattctctctgagcaaacaatggctacata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40909942 |
caagaggaactttcatttggtttgagaattaaaggttacttacctcagatttatagtagctatttaactgcattctctctgagcaaacaatggctacata |
40910041 |
T |
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| Q |
116 |
tctcagatttaaatggtttttggctattgtttaatagagattattaactgaaacttgaaattaacttgatagttgaagagtttcttcctttgtttgaatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
40910042 |
tctcagatttaaatggtttttggctattgtttaatagagattattaactgaaacttgaaattaacttaataattgaagagtttcttcctttgtttgaatt |
40910141 |
T |
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| Q |
216 |
tcaattta--ctcctttttatttatcatctcctcacaaggggttgt |
259 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
40910142 |
tcaatttactctcctttttatttctcatctcctcacaaggggttgt |
40910187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 36465585 - 36465658
Alignment:
| Q |
84 |
tgcattctctctgagcaaacaatggctacatatctcagatttaaatggtttttggctattgtttaatagagatt |
157 |
Q |
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|||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36465585 |
tgcattctctcttagcaaacaatggctccatgtctcagacttaaatggtttttggctattgtttaatagagatt |
36465658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 99573 - 99740
Alignment:
| Q |
24 |
actttcatttggtttgagaattaaaggttacttacctcag-atttatagtagctatttaactgcattctctctgagcaaacaatggctacatatctcaga |
122 |
Q |
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||||||| || | ||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |
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| T |
99573 |
actttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcattctctctgagcaaacaatggctacatgtctcata |
99672 |
T |
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| Q |
123 |
tttaaatggtttttggctattgtttaatagagatt------attaactgaaacttgaaattaacttga |
184 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
99673 |
tttacatggtttttggctattgtttaatagagattctataaattaactaaaacttgaaattaacttga |
99740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 24469297 - 24469220
Alignment:
| Q |
70 |
agtagctatttaactgcattctctctgagcaaacaatggctacatatctcagatttaaatggtttttggctattgttt |
147 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
24469297 |
agtagctatttgaccacattctctctgagcaaacaatggctacatgtctcagatttaaatggtttttgactattgttt |
24469220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 37360602 - 37360518
Alignment:
| Q |
73 |
agctatttaactgcattctctctgagcaaacaatggctacatatctcagatttaaatggtttttggctattgtttaatagagatt |
157 |
Q |
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|||||||| |||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| ||| || |||||| |||||||| |
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| T |
37360602 |
agctatttgactgcactctctttgagcaaacaatggttacatgcctcagatttaagaggtttgtggttaatgtttagtagagatt |
37360518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 6225464 - 6225420
Alignment:
| Q |
158 |
attaactgaaacttgaaattaacttgatagttgaagagtttcttc |
202 |
Q |
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| T |
6225464 |
attaacttaaaattgaaattaacttgatagttgaagagtttcttc |
6225420 |
T |
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