View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8987_low_3 (Length: 515)
Name: NF8987_low_3
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 255 - 497
Target Start/End: Complemental strand, 8931526 - 8931278
Alignment:
| Q |
255 |
ggaatgaattgtttctctcgttgagtggagaagcatttagtatgatgattgataaacactggttaatttgtcgcaatgtgaaaaaatagccatgcatgat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931526 |
ggaatgaattgtttctctcgttgagtggagaagcatttagtatgatgattgataaacactggttaatttgtcgcaatgtgaaaaaatagccatgcatgat |
8931427 |
T |
|
| Q |
355 |
tgttgattttatcatcactcacatgattta----agtagataagaaaaatatatgctcttac--nnnnnnnngtacataagaaaaatcatcttccatgtt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8931426 |
tgttgattttatcatcactcacatgatttaagtaagtagataagaaaaatatatgctcttacaaaaaaaaaagtacataacaaaaatcatcttccatgta |
8931327 |
T |
|
| Q |
449 |
tattttgttacaaggggaaacgtcgtggttctcttgtaattgatctttg |
497 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8931326 |
tattttgttataaggggaaacgtcgtggttctctcgtaattgatctttg |
8931278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 8931770 - 8931612
Alignment:
| Q |
18 |
catgtgttccatctaatgtttagcgtgtgcgggtttctc-------tttaagttgtgttgtatgctgataaagcttaagcaggagaaatgcaacagcaag |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931770 |
catgtgttccatctaatgtttggcgtgtgcgggtttctcctgatattttaagttgtcttgtatgctgataaagcttaagcaggagaaatgcaacagcaag |
8931671 |
T |
|
| Q |
111 |
ccttgtagagtaccttagtgctgaatcgctttctcatctcaaaagctggcgtgccatcc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931670 |
ccttgtagagtaccttagtgctgaatcgctttctcatctcaaaagctggcgtgccatcc |
8931612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University