View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8987_low_34 (Length: 254)
Name: NF8987_low_34
Description: NF8987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8987_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 3428038 - 3428257
Alignment:
| Q |
17 |
acatcacattatatatgcaataacggagtttgaatcttggataccccacttattcattttaaggtccggaagaaagctcccacatgatctcacgtgcatg |
116 |
Q |
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| T |
3428038 |
acatcacattatatatgcaatgacggagtttgaatctcggatactccacttattcattttaaggtccggaagaaagctcccacatgatctcacgtgcatg |
3428137 |
T |
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| Q |
117 |
gtccaaatctcaaatggttaaaacacttggaactaaacacacaaccttataaaaaacaaacaaaccaaatagtagcattttgtgtgtgtacatgttgtac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428138 |
gtccaaatctcaaatggttaaaacacttggaactaaacacacaaccttataaaaaacaaacaaaccaaatagtagcattttgtgtgtgtacatgttgtac |
3428237 |
T |
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| Q |
217 |
atgtaacatagtggtcacat |
236 |
Q |
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|||||||||||||||||||| |
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| T |
3428238 |
atgtaacatagtggtcacat |
3428257 |
T |
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