View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8988_high_9 (Length: 219)

Name: NF8988_high_9
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8988_high_9
NF8988_high_9
[»] scaffold0087 (6 HSPs)
scaffold0087 (10-200)||(32764-32954)
scaffold0087 (13-200)||(3920-4107)
scaffold0087 (13-158)||(28766-28911)
scaffold0087 (31-158)||(11402-11529)
scaffold0087 (32-158)||(38868-38994)
scaffold0087 (31-151)||(54042-54162)
[»] chr6 (26 HSPs)
chr6 (12-200)||(5851572-5851760)
chr6 (31-200)||(5754376-5754545)
chr6 (24-188)||(5828643-5828807)
chr6 (31-151)||(5763064-5763184)
chr6 (31-151)||(5766599-5766719)
chr6 (31-151)||(5770134-5770254)
chr6 (31-151)||(5773669-5773789)
chr6 (31-151)||(5777204-5777324)
chr6 (31-151)||(5780739-5780859)
chr6 (31-151)||(5784274-5784394)
chr6 (31-151)||(5787809-5787929)
chr6 (31-151)||(5791344-5791464)
chr6 (31-151)||(5794879-5794999)
chr6 (31-151)||(5798414-5798534)
chr6 (31-151)||(5801949-5802069)
chr6 (31-151)||(5805484-5805604)
chr6 (31-151)||(5809019-5809139)
chr6 (31-151)||(5812554-5812674)
chr6 (31-151)||(5816089-5816209)
chr6 (31-151)||(5819624-5819744)
chr6 (13-197)||(5891429-5891613)
chr6 (14-158)||(5825723-5825867)
chr6 (10-158)||(5878712-5878860)
chr6 (69-130)||(2715723-2715784)
chr6 (92-188)||(5878866-5878962)
chr6 (81-188)||(5825862-5825969)


Alignment Details
Target: scaffold0087 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 32764 - 32954
Alignment:
Q  10 tagattatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaa 109  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||  | | ||||||||    
T  32764 tagattatactaaaggattgcaaggtaagttagattcttcaatatgtgaactgcaacatcttacttctttaaatcttgataataatcgcattgaaggaaa 32863  T
Q  110 gattccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattccttcgagtctaggg 200  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||  || ||||||| ||||||||| ||||||| | |||||||||    
T  32864 gattccaaagtgcattggttcacttggtaagttgatagagttaaatcttattggtaacaaacttgttagtgtcattcctcctagtctaggg 32954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 3920 - 4107
Alignment:
Q  13 attatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagat 112  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||  |  ||| |||||||||||||||||    
T  3920 attatactaaagaattgcgaggtaagttagattcttcaatatgtgaactgaaacatcttacttctttaaatctttatcgtaacaacttagaaggaaagat 4019  T
Q  113 tccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattccttcgagtctaggg 200  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||  | ||||| | |||| | ||| ||||||| | |||||||||    
T  4020 tccaaagtgcattggttcacttgataagttgatagagttgaatcttggttataactattttgatggtgtcattcctcctagtctaggg 4107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 28766 - 28911
Alignment:
Q  13 attatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagat 112  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||   |  |||| | || |||||||||||    
T  28766 attatactaaagaattgcgaggtaagttagattcttcaatatgtgaattgcaacatcttacttctttaaatctcaatggtaatcaatttgaaggaaagat 28865  T
Q  113 tccaaagtgcattggttcacttagtaagttgatagagttgaatctt 158  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  28866 tccaaagtgcattggttcacttgataagttgatagagttgaatctt 28911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 11402 - 11529
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||   |  |||| | || |||||||||||||||||||||||||||||    
T  11402 gaggtaagttagattcttcaatatgtgaattgcaacatcttacttctttaaatctctttggtaatcaatttgaaggaaagattccaaagtgcattggttc 11501  T
Q  131 acttagtaagttgatagagttgaatctt 158  Q
    ||||  ||||||||||||||||||||||    
T  11502 acttgataagttgatagagttgaatctt 11529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 38868 - 38994
Alignment:
Q  32 aggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttca 131  Q
    |||||||||||||||||||||||||||| | ||||| || |||||||||||||||||| |||||  ||||||||||||||| |||||||||||||| |||    
T  38868 aggtaagttagattcttcaatatgtgaattgcaacaccttacttctttaaatcttggttataatctcttagaaggaaagataccaaagtgcattggctca 38967  T
Q  132 cttagtaagttgatagagttgaatctt 158  Q
    ||| || | |||||||| |||||||||    
T  38968 cttggtcaattgatagaattgaatctt 38994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 54042 - 54162
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    |||||||||||||||||||||||||||||||  ||||||| |||| |||||||||   | ||||| | || |||||||||||||||||||||||||||||    
T  54042 gaggtaagttagattcttcaatatgtgaactgaaacatcttacttatttaaatctcaatgataatcaatttgaaggaaagattccaaagtgcattggttc 54141  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| |||| ||||| |||||    
T  54142 acttggtaacttgattgagtt 54162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 5851572 - 5851760
Alignment:
Q  12 gattatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaaga 111  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  |||| | || ||||||||||    
T  5851572 gattatactaaagcattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatctccatggtaatcaatttgaaggaaaga 5851671  T
Q  112 ttccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattccttcgagtctaggg 200  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||  ||||||||| ||||||| | |||||||||    
T  5851672 ttccaaagtgcattggttcacttgataagttgatagaactgaatcttcatgataacaatcttgttagtgtcattcctcctagtctaggg 5851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 5754376 - 5754545
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    |||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5754376 gaggtaagttagattcttcaatatgtgaactgaaacatcctacttctttaaatcttggtcataattacttagaaggaaagattccaaagtgcattggttc 5754475  T
Q  131 acttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattccttcgagtctaggg 200  Q
    ||||  ||||||||||||||||||||||  | ||||  | |||||| ||| ||||||| | |||||||||    
T  5754476 acttgataagttgatagagttgaatcttggttataattattttgttggtgtcattcctcctagtctaggg 5754545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 5828643 - 5828807
Alignment:
Q  24 agattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgca 123  Q
    |||||| | |||||||||||||||||||||||||||||  ||||||| |||||||||||||||| | ||||||| |||||| | ||||| ||||||||||    
T  5828643 agattgagcggtaagttagattcttcaatatgtgaactgaaacatcttacttctttaaatcttgcttataataaattagaaagtaagataccaaagtgca 5828742  T
Q  124 ttggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattcct 188  Q
    |||||||||||||||||||||||||||| ||||||  || ||||||| ||||||||| |||||||    
T  5828743 ttggttcacttagtaagttgatagagttaaatcttattggtaacaaacttgttagtgtcattcct 5828807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5763064 - 5763184
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5763064 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5763163  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5763164 acttggtaagttgatagagtt 5763184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5766599 - 5766719
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5766599 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5766698  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5766699 acttggtaagttgatagagtt 5766719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5770134 - 5770254
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5770134 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5770233  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5770234 acttggtaagttgatagagtt 5770254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5773669 - 5773789
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5773669 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5773768  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5773769 acttggtaagttgatagagtt 5773789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5777204 - 5777324
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5777204 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5777303  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5777304 acttggtaagttgatagagtt 5777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5780739 - 5780859
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5780739 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5780838  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5780839 acttggtaagttgatagagtt 5780859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5784274 - 5784394
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5784274 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5784373  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5784374 acttggtaagttgatagagtt 5784394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5787809 - 5787929
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5787809 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5787908  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5787909 acttggtaagttgatagagtt 5787929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5791344 - 5791464
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5791344 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5791443  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5791444 acttggtaagttgatagagtt 5791464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5794879 - 5794999
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5794879 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5794978  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5794979 acttggtaagttgatagagtt 5794999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5798414 - 5798534
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5798414 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5798513  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5798514 acttggtaagttgatagagtt 5798534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5801949 - 5802069
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5801949 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5802048  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5802049 acttggtaagttgatagagtt 5802069  T

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Target: chr6; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5805484 - 5805604
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5805484 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5805583  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5805584 acttggtaagttgatagagtt 5805604  T

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Target: chr6; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5809019 - 5809139
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5809019 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5809118  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5809119 acttggtaagttgatagagtt 5809139  T

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Target: chr6; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5812554 - 5812674
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5812554 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5812653  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5812654 acttggtaagttgatagagtt 5812674  T

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Target: chr6; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5816089 - 5816209
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5816089 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5816188  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5816189 acttggtaagttgatagagtt 5816209  T

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Target: chr6; HSP #20
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 5819624 - 5819744
Alignment:
Q  31 gaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |  ||||||||||||||| |||||||||||||||||    
T  5819624 gaggtaagttagattattcaatatgtgaacttcaacatcttatttctttaaatcttgataatattggcttagaaggaaagataccaaagtgcattggttc 5819723  T
Q  131 acttagtaagttgatagagtt 151  Q
    |||| ||||||||||||||||    
T  5819724 acttggtaagttgatagagtt 5819744  T

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Target: chr6; HSP #21
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 5891613 - 5891429
Alignment:
Q  13 attatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagat 112  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | || | ||| || || || || |||||||||||||    
T  5891613 attatactaaagcattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaatttttctagaacttagttatcattacctagaaggaaagat 5891514  T
Q  113 tccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattccttcgagtcta 197  Q
     ||| | ||||| || |||||| || || ||| ||||||||| |||  || ||||||||||||||||| ||||||||| ||||||    
T  5891513 cccacactgcatgggctcacttggtcagctgaaagagttgaaacttagtggtaacaaatttgttagtgtcattccttctagtcta 5891429  T

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Target: chr6; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 5825723 - 5825867
Alignment:
Q  14 ttatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaagatt 113  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||| |||||| |||||||   || ||||||| || | ||||| ||     
T  5825723 ttatactaaaggattgcaaggtaagttagattcttcaatatgtgaactgcaatatcttacttctataaatctcaatagtaataacctacatggaaaaatc 5825822  T
Q  114 ccaaagtgcattggttcacttagtaagttgatagagttgaatctt 158  Q
    ||||||||||||||| ||||| || |  |||||||||||||||||    
T  5825823 ccaaagtgcattggtacacttggtcaactgatagagttgaatctt 5825867  T

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Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 5878712 - 5878860
Alignment:
Q  10 tagattatactaaaagattgcgaggtaagttagattcttcaatatgtgaacttcaacatctaacttctttaaatcttggtaataataacttagaaggaaa 109  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||| | |||| |||||||   ||  |||||| || | |||||    
T  5878712 tagattatactaaaggattgcaaggtaagttagattcttcaatatgtgaactgcaatatcttagttctataaatctcaatagaaataacctacatggaaa 5878811  T
Q  110 gattccaaagtgcattggttcacttagtaagttgatagagttgaatctt 158  Q
     || ||||||||||||||||||||| || |  |||||||||||||||||    
T  5878812 aatcccaaagtgcattggttcacttggtcaactgatagagttgaatctt 5878860  T

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Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 2715784 - 2715723
Alignment:
Q  69 ctaacttctttaaatcttggtaataataacttagaaggaaagattccaaagtgcattggttc 130  Q
    |||||||||||||||||||||||| || ||||||||||| |||| |||||||| ||||||||    
T  2715784 ctaacttctttaaatcttggtaatcattacttagaaggagagataccaaagtgtattggttc 2715723  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 5878866 - 5878962
Alignment:
Q  92 taataacttagaaggaaagattccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtgccattcct 188  Q
    |||| |||||||||||||||| |||||  ||||||| |||||| |||| |||||||||||  |||||  || ||| ||| ||||||||| |||||||    
T  5878866 taattacttagaaggaaagataccaaaaagcattgggtcacttggtaacttgatagagttagatcttagtggtaataaacttgttagtgtcattcct 5878962  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 5825862 - 5825969
Alignment:
Q  81 aatcttggtaataataacttagaaggaaagattccaaagtgcattggttcacttagtaagttgatagagttgaatcttcatgataacaaatttgttagtg 180  Q
    |||||||||  ||||  ||||||||||||||| |||||  |  |||| |||||| |||| ||||||||||| ||||||  || ||| ||| |||||||||    
T  5825862 aatcttggttttaatggcttagaaggaaagataccaaaaagtgttgggtcacttggtaacttgatagagttaaatcttagtggtaataaacttgttagtg 5825961  T
Q  181 ccattcct 188  Q
     |||||||    
T  5825962 tcattcct 5825969  T

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