View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_11 (Length: 360)
Name: NF8988_low_11
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 11573618 - 11573945
Alignment:
| Q |
19 |
aaacgggcatgcaatgtaagnnnnnnnnaattttgcaattgaataaatacaaacaatgttaaaatataaactttaaagaatgatatcacatggactatta |
118 |
Q |
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| T |
11573618 |
aaacgggcatgcaatgtaagttttttttaattttgcagttgaataaatacaaacaatgttaaaatatatactttaaagaatgatatcacatggtctatta |
11573717 |
T |
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| Q |
119 |
ttgaaccttagtgtaaatttgaatttaggtacccgtgatttatcctagaaatggggttgaagaagcataagattgaagattccctcttgtttatattatg |
218 |
Q |
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| T |
11573718 |
ttgaaccttagtgtaaatttgaatttaggtacccgtgatttgtcctagaaatggggttgaagaagcataagattgaagattccctcttgtttatattatg |
11573817 |
T |
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| Q |
219 |
aattgtgttggaatccaaggaactgttttattagctagccgtgatttcataggagggtagctgctgctggcgaatttgtttggccactgttggcgcatcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||||| |
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| T |
11573818 |
aattgtgttggaatccaaggaactgttttattagctagacgtgatttcataggaggggagctgctgctgtcgaatttgtttgactgctgttggtgcatcg |
11573917 |
T |
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| Q |
319 |
gttttctgttgtagcagttgcgtctgtg |
346 |
Q |
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||||||||||| ||||| |||||||||| |
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| T |
11573918 |
gttttctgttgaagcagctgcgtctgtg |
11573945 |
T |
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