View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_13 (Length: 355)
Name: NF8988_low_13
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 52007293 - 52006950
Alignment:
| Q |
1 |
catgatgactaagacttgcaagagctaggcgaggtggcacaagggctaagttgacccgaccgtcaacaaaaacaaccgtgatgtcaaagttttaagtggt |
100 |
Q |
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| T |
52007293 |
catgataactaagacttccaagagctaggtgaggtggcacaagggctaagttgacccgaccgtcaacaaaaacaaccatgatgtcaaagttttaagtggt |
52007194 |
T |
|
| Q |
101 |
gcaccttaattcatgcctataattttagtcatataccactcacgctgtgtataattaaaaatctaacctcaattagtctttattattgaattagttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52007193 |
gcaccttaattcatgcctataattttagtcatataccactcacgctgtgtataattaaaaatctaacctcaattagtctttattattgaattagttattg |
52007094 |
T |
|
| Q |
201 |
cac--nnnnnnnngtatatataatgcctattctaaactgattgacaaaaatccatcctgattcaagagaattgcaaagagtaaatacaattggcctaata |
298 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52007093 |
cacaaaaaaaagagtatatataatgcctattctaaactgattgacaaaaatctatcctgattcaagagaattgcaaagagtaaatacaattggcctaata |
52006994 |
T |
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| Q |
299 |
aatgactgccacacaatgtgagcattcatgtccatgaattattt |
342 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52006993 |
aatgactgccacacaatgtgagcattcatatccatgaattattt |
52006950 |
T |
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