View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_14 (Length: 311)
Name: NF8988_low_14
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 42945716 - 42945420
Alignment:
| Q |
1 |
ttactgagatttggaatggagtttccattatgaggcctagttcacccagtttgcacacatctcgtacacgtacccgtacccgtaagccacgtcaacatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42945716 |
ttactgagatttggaatggagtttccattatgaggcctagttcacccagtttgcatacatctcgtacacatacccgtacccgtaagccacgtcaacatta |
42945617 |
T |
|
| Q |
101 |
actataaagtttgtgtttggtattagggtgggtttgacaaattcctgatagcaccgtgattttgtagaagctgcaaaaatgtagcttttgtaaaatcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42945616 |
actataaagtttgtgtttggtattagggtgggtttgacaaattcctgatagcaccgtgattttgtagaagctacaaaaatgtagcttttgtaaaatcatg |
42945517 |
T |
|
| Q |
201 |
gcggctgccaaacccactatgataccaaacaagctttaagttctctagtgcaaggtcttttgttaaccaagtagatgtgtaaaaagctgcactatgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42945516 |
gcggctgccaaacccactatgataccaaacaagctttaagttctctagtgcaaggtcttttgttaaccaagtagttgtgtaaaaagctgcactatgt |
42945420 |
T |
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