View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8988_low_2 (Length: 1078)
Name: NF8988_low_2
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 755; Significance: 0; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 18 - 940
Target Start/End: Original strand, 15997123 - 15998051
Alignment:
| Q |
18 |
tattttcattttgactcaacatctttaatttttctttgctgtctctctctccaaatccttgccctgagannnnnnna-tttatctattacctaataaatt |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| || |||||||| | |||| ||||| ||||||||||| |
|
|
| T |
15997123 |
tattttcattttaactcaacatctttaatttttctttgcagtctctctc--caaatcttttccctgagatttttttaatttagctattgcctaataaatt |
15997220 |
T |
|
| Q |
117 |
tgaagaatttaaatgtcaattaaccctaaacataaatataatatctaaagaagattttaaaatactgttttttaaaagccattattttgagaattcacct |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
15997221 |
tgaagagtttaaatgtcaattaaccctaaacataaatataatatctaaagaagattttaaaatactattttttaaaagccattattttgagagttcacct |
15997320 |
T |
|
| Q |
217 |
tgtttaatcaaagaaatcacacttgat-ttgaaagtggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatg |
315 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997321 |
tgtttaatcaaagaaatcatacttgatcttgaaagtggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatg |
15997420 |
T |
|
| Q |
316 |
aagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataaatacgtgcaagaaaaataattgaggaaagtggaattagatctgat |
415 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997421 |
aagctgcaacaattttagcagaaattggaagaaaatcgattacaaataaaaataaatacgtgcaagaaaaataattgaggaaagtggaattagatctgat |
15997520 |
T |
|
| Q |
416 |
ttaaggcatacctgtgggtagttaaacataccaaggggtcgctcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997521 |
ttaaggcatacctgtgggtagttaaacataccaaggggtcgctcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagt |
15997620 |
T |
|
| Q |
516 |
aataataatttgtgagagggttagg----gctgccgaagataataatgagagagtgagtagcagctgcaagtgaaaagggttactttgaaaaccctaatt |
611 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997621 |
aataataatttttgagagggttagggatagcagccgaagataataatgagagagtgagtagcagctgcaagtgaaaagggttactttgaaaaccctaatt |
15997720 |
T |
|
| Q |
612 |
atctattatatataagagtcatgattgcacagtgtccaattgggctacctgtttgttatggattctgattttgttgggttgggccagaaagccttattta |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997721 |
atctattatatataagagtcatgattgcacagtatccaattgggctacttgtttgttatggattctgattttgttgggttgggccagaaagccttattta |
15997820 |
T |
|
| Q |
712 |
aatatggaacattataacatgcaccgctacacttatacttccacctctataaagaacaaagcataaaaaatccactttattcctcttgtcattagacttc |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15997821 |
aatatggaacattataacatgcaccgctacacttatacttccacctctataaagaacaaagcataaaatatccactttattcctcttgtcattagacttc |
15997920 |
T |
|
| Q |
812 |
accccacaaaacattttctatgccg--nnnnnnnncttcatgaattgagtaaatgacaatcaaatttataaattggaaaatagagaacaagtgttccaaa |
909 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15997921 |
accccacaaaacattttctatgccgttttttttttcttcatgaattgaataaatgacaatcaaatttataaattggaaaatagagaacaagtgttccaaa |
15998020 |
T |
|
| Q |
910 |
aagcctcatcaaacgcaccgttttacttacc |
940 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
15998021 |
aagcctcatcaaatgcaccgttttacttacc |
15998051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 245 - 781
Target Start/End: Complemental strand, 8268001 - 8267450
Alignment:
| Q |
245 |
tgaaagtggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattaga |
344 |
Q |
| |
|
|||||| ||||||||||| || ||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8268001 |
tgaaagcggtttgtagattaccacaagaaatcgaaatcattatcaaggaataacattcgatctctacaatgaagctgcaacaattttagcagaaattaga |
8267902 |
T |
|
| Q |
345 |
agaaaatcgattgcaaataaaaataaatacgtgc--aagaaaaataattgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaac |
442 |
Q |
| |
|
||||||| |||| | |||||||| ||||| ||| || || ||||||||||||||||||||||||||| ||| |||||||| |||| | |||||||| |
|
|
| T |
8267901 |
agaaaatagattagagataaaaatgaatacatgcaaaataataataattgaggaaagtggaattagatcagatctaaggcatttttgtgtgcagttaaac |
8267802 |
T |
|
| Q |
443 |
ataccaaggggtcgctcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataataatttgtgagagggttagggc |
542 |
Q |
| |
|
|||||||||| || ||||||| || | |||||||||||||| |||||||||||||| ||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
8267801 |
ataccaagggctctctcatggaagatttttgtctacatttggtggaatggaaggaacaacaatacgtgaaag---taataatttgtgagagggttaggga |
8267705 |
T |
|
| Q |
543 |
t----gccg-----aagataataatgagagagtgagtagcagctgcaagtgaaaagggttactttgaaaaccctaattatctattatatataagagtcat |
633 |
Q |
| |
|
| |||| |||||||| || || ||||||||||||| || | ||||||| | ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8267704 |
tggtagccgcaaatcagataatagtgtgacagtgagtagcagcggctaatgaaaagaggtactttgaaaaccctaattatctattatatataagagtcgt |
8267605 |
T |
|
| Q |
634 |
gattgcac-------agtgtccaattgggctacctgtttgttatggattctgattttgttgggttgggccagaaagccttatttaaatatggaacattat |
726 |
Q |
| |
|
||||||| |||||| || |||||||| |||||||| ||||||| ||||||||||||| | ||||||||||||||||||||| | |||||||| |
|
|
| T |
8267604 |
tattgcacaatctatagtgtcaaaatgggctacatgtttgttttggattcgaattttgttgggttagaccagaaagccttatttaaatacgaaacattat |
8267505 |
T |
|
| Q |
727 |
aacatgcaccgctacacttatacttccacctctataaagaacaaagcataaaaaa |
781 |
Q |
| |
|
| |||| || |||||||||||||| |||||||| |||| ||||| |||||||| |
|
|
| T |
8267504 |
accatgtactactacacttatactttcacctctacaaaggacaaactataaaaaa |
8267450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 100 - 707
Target Start/End: Original strand, 12065136 - 12065750
Alignment:
| Q |
100 |
ctattacctaataaatttgaagaatttaaatgtcaattaaccctaaacataaatataatatctaaagaagattttaaaatactgttttttaaaagccatt |
199 |
Q |
| |
|
|||||||||||||| | || ||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||| |||| | | ||||| || |
|
|
| T |
12065136 |
ctattacctaataagtaggagaaatttgaatgtcatttaaccctaaacataaatataatatgtaaagaacattttgaagtaccgtttgtaagaagccctt |
12065235 |
T |
|
| Q |
200 |
attttgagaattcaccttgtttaatcaaagaaatcacacttgatttgaaagtggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagca |
299 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
12065236 |
cttttgagaattaac-ttatttaatcaaagaaatcacactcg------------tttgtagatgaccacaagaaatcgaaatcattatcaaggaatagcg |
12065322 |
T |
|
| Q |
300 |
tccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataaatacgtgcaaga-------aaaataattg |
392 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |||| | ||||||||| || || ||||| | |||| ||||| |
|
|
| T |
12065323 |
tccgatctctacaatgaacctgcaacaattttagcaaaaattagaagaaaatagattacgaataaaaatgaacacttgcaaaaaaaaaacaaaaaaattg |
12065422 |
T |
|
| Q |
393 |
aggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgctcatggcagctatttgtctacatttgatggaatgg |
492 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || |||||| || ||||||| || || |||||| ||||| ||||| |||||||| |||| ||| |
|
|
| T |
12065423 |
aggaaagtggaattagatctgatctaaggcatacctttgtgtagtttaaaataccaaaggctcactcatgacagctttttgtttacatttggtggagtgg |
12065522 |
T |
|
| Q |
493 |
aaggaataacaaaaagtgaaagtaataataatttgtgagagggttagggct-gccgaag------ataataatgagagagtgagtagcagctgcaagtga |
585 |
Q |
| |
|
|||||| ||||||| ||||||| | ||||||||||||||||||| || | || | || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
12065523 |
aaggaacaacaaaacgtgaaag---tgataatttgtgagagggttaaggatagcagcagcaaataataataatctgagagtgagtagcagctgcaagtga |
12065619 |
T |
|
| Q |
586 |
aaagggttactttgaaaaccctaattatctattatatata----agagtcatgattgcacagt-----gtccaattgggctacctgtttgttatggattc |
676 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
12065620 |
gaagggctactttgaaaaccctaattatctattatatatatactagagtcattcttgcacagttgagaatcaaaatgggctacctgtttgttatggattc |
12065719 |
T |
|
| Q |
677 |
tgattttgttgggttgggccagaaagcctta |
707 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
12065720 |
gggttttgttgggttgggccagaaagcctta |
12065750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 254 - 784
Target Start/End: Original strand, 15973109 - 15973627
Alignment:
| Q |
254 |
tttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcg |
353 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
15973109 |
tttgtagatgaccacaagaaatcgaaatcattatcaaggaatagcatccaatttctacaatgaagctgcaacaatattagcagaaattagaagaaaatag |
15973208 |
T |
|
| Q |
354 |
attgcaaataaaaataaatacgtgcaagaaaaataat-tgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggg |
452 |
Q |
| |
|
||| | ||||||||| ||||| |||| ||||| || ||||||||||||||| ||||| ||| ||||||| |||||||| ||| |
|
|
| T |
15973209 |
attaccaataaaaatgaatacaagcaacaaaaaaaaactgaggaaagtggaatcagatcagatctaaggca-----------------acatacca-ggg |
15973290 |
T |
|
| Q |
453 |
gtcgctcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataataatttgtgagagggtt-agggctgccgaaga |
551 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||||| || ||| ||||||| |||||||||||||| ||||||||||| | | || |||| ||| |
|
|
| T |
15973291 |
atcactcatggcagctttttgtctacatttggtggaatgcaatgaacaacaaaatgtgaaagtaataat---ttgtgagaggggtgatagcagccgcaga |
15973387 |
T |
|
| Q |
552 |
taataatgagagagtgagtagcagctgcaagtgaaaagggttactttgaaaaccctaattatctattatatataagagtcatgattgcac-------agt |
644 |
Q |
| |
|
||||| || |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
15973388 |
taatagtgtgagaatgagtagcagcagcaagtgaaaagggttacattgaaaaccctaattatctattatatataagagtcattgttgcacaatctatagt |
15973487 |
T |
|
| Q |
645 |
gtccaattgggctacctgtttgttatggattctgattttgttgggttgggccagaaagccttatttaaatatggaacattataacatgcaccgctacact |
744 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||| | ||||||||||| |||| ||| ||||||| |
|
|
| T |
15973488 |
gtccaaatgggctacctgtttgttatggatccagattttgttgggttgggccaaaaagtattatttaaacagggaacattataccatgtaccactacact |
15973587 |
T |
|
| Q |
745 |
tatacttccacctctataaagaacaaagcataaaaaatcc |
784 |
Q |
| |
|
||||||| ||||||| |||| ||||| ||| ||| |||| |
|
|
| T |
15973588 |
tatactttgacctctacaaaggacaaaccattaaacatcc |
15973627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 252 - 520
Target Start/End: Complemental strand, 19144327 - 19144061
Alignment:
| Q |
252 |
ggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaat |
351 |
Q |
| |
|
|||||||||| ||| ||| ||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
19144327 |
ggtttgtagaggaccacaagaaattgaaatcattatcaaagaatagcatccgatctcttcaaggaagctgccacaattttagcagaaattagaagaacac |
19144228 |
T |
|
| Q |
352 |
cgattgcaaataaaaataaatacgtgcaagaaaaataa---ttgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacatacca |
448 |
Q |
| |
|
|||| || || ||||| |||| ||||| ||||| || ||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||| |
|
|
| T |
19144227 |
agattacatattaaaatgaatatatgcaaaaaaaaaaaaatttgaggaaagtggaattagatct-----aaggcatacttgtgtgtagttacacatacca |
19144133 |
T |
|
| Q |
449 |
aggggtcgctcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataa |
520 |
Q |
| |
|
|||| || |||||||||||| |||||||||||||| |||||| ||| ||| ||||||| ||||||||||||| |
|
|
| T |
19144132 |
agggctctctcatggcagctttttgtctacatttggtggaatagaaagaacaacaaaacgtgaaagtaataa |
19144061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 278 - 520
Target Start/End: Complemental strand, 19123283 - 19123041
Alignment:
| Q |
278 |
aaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataaatacgtg |
377 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| | |||| ||||| ||||| ||||| || |
|
|
| T |
19123283 |
aaatcattatcaaagaatagcatccgatctcttcaaggaagctgcaacaattttagcagaaattagaagaacacagattacaaattaaaatgaatacatg |
19123184 |
T |
|
| Q |
378 |
caagaaaaat----aattgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgctc--atggcagctatt |
471 |
Q |
| |
|
||| |||||| ||||||||||| |||||||| ||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||| | || |
|
|
| T |
19123183 |
caaaaaaaataaaaaattgaggaaaatggaattatatc-----taaggcatacctgtgtgtagttaatcataccaagggctcgctcatatggcag-tttt |
19123090 |
T |
|
| Q |
472 |
tgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataa |
520 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
19123089 |
tgtctatattttgtggaatggaagacacaacaaaacgtgaaagtaataa |
19123041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 271 - 520
Target Start/End: Complemental strand, 15648842 - 15648588
Alignment:
| Q |
271 |
gaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataa |
370 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |||| ||||| ||| | | |
|
|
| T |
15648842 |
gaaatcgaaatcattatcaaggaatagcatccgatctctacaatgaagctgcaacaatttaagcagaaattagaggaaaatagattacaaattaaactga |
15648743 |
T |
|
| Q |
371 |
atac--gtgcaagaaaaataa-----------ttgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgc |
457 |
Q |
| |
|
||| || || ||||| || | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
15648742 |
ctacaagttaaaaaaaaaaaaaaacaaaaatctagaggaaagtggaattagatc-----taaggcatacctgtttgtagttaaacataccaagggttcgc |
15648648 |
T |
|
| Q |
458 |
tcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataa |
520 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
15648647 |
tcatgacagctttttgtttacatttggtggaatggaagg---aacaaaaggtgaaagtaataa |
15648588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 982 - 1070
Target Start/End: Original strand, 15998106 - 15998194
Alignment:
| Q |
982 |
caagcacggtctagaacctaccacatatttccttcattcattttcccttcccctttctactttgctctcattccttctctctgctcctc |
1070 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15998106 |
caagcacggtctagaagctaccacatatttccttcattcattttcccttcccctttctactttgctctcattccttctctctgttcctc |
15998194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 271 - 473
Target Start/End: Complemental strand, 15606517 - 15606311
Alignment:
| Q |
271 |
gaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataa |
370 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | || ||||| ||| | | |
|
|
| T |
15606517 |
gaaatcgaaatcattatcaaggaatagcatccgatctctacaatgaagctgcaacaattttagcagaaattagaggaaaataggttacaaattaaactga |
15606418 |
T |
|
| Q |
371 |
atacgtgcaagaaaaataa---------ttgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgctcat |
461 |
Q |
| |
|
||| |||| ||||| || | |||||||||||||||||||| |||||||||||||| ||||||||||||| ||| || |||||||| |
|
|
| T |
15606417 |
ctacaagcaacaaaaaaaataaaaaatctagaggaaagtggaattagatc-----taaggcatacctgtttgtagttaaacataacaaaggttcgctcat |
15606323 |
T |
|
| Q |
462 |
ggcagctatttg |
473 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
15606322 |
gacagctttttg |
15606311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 271 - 520
Target Start/End: Complemental strand, 15625048 - 15624800
Alignment:
| Q |
271 |
gaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaatt----ttagcagaaattagaagaaaatcgattgcaaataaaa |
366 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||| ||||| ||| |
|
|
| T |
15625048 |
gaaatcgaaatcattatcaaggaatagcatccgatctctacaatgaagctgcaacaattttaattagcagaaattagaggaaaatagattacaaattaaa |
15624949 |
T |
|
| Q |
367 |
ataaatac--gtgcaagaaaaata-------attgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgc |
457 |
Q |
| |
|
| | ||| || || ||||||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
15624948 |
ctgactacatgttaaaaaaaaatacaaaaatctagaggaaagtggaattagatc-----taaggcatac------gtagttaaacataccaagggttcgc |
15624860 |
T |
|
| Q |
458 |
tcatggcagctatttgtctacatttgatggaatggaaggaataacaaaaagtgaaagtaataa |
520 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
15624859 |
tcatgacagctttttgtttacatttggtggaatcgaagg---aacaaaaggtgaaagtaataa |
15624800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 271 - 498
Target Start/End: Complemental strand, 15638225 - 15638020
Alignment:
| Q |
271 |
gaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaagaaaatcgattgcaaataaaaataa |
370 |
Q |
| |
|
||||||||||||||||||||| || | ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| | || ||||| || | | |
|
|
| T |
15638225 |
gaaatcgaaatcattatcaaggaacaacatccaatctctacaatgaagctgcaacaattttagcagaaattagaggaaaataggttacaaattaatctga |
15638126 |
T |
|
| Q |
371 |
atacgtgcaagaaaaataattgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgctcatggcagctat |
470 |
Q |
| |
|
||| |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||| | |
|
|
| T |
15638125 |
ctac-------aaaa----------aaagtggaattagatc-----taaggcatacctgtttgtagttaaacataccaagggttcgctcatgacagcttt |
15638048 |
T |
|
| Q |
471 |
ttgtctacatttgatggaatggaaggaa |
498 |
Q |
| |
|
|||| |||||||| |||||||||||||| |
|
|
| T |
15638047 |
ttgtttacatttggtggaatggaaggaa |
15638020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 793 - 916
Target Start/End: Complemental strand, 8267411 - 8267288
Alignment:
| Q |
793 |
cctcttgtcattagacttcaccccacaaaacattttctatgccgnnnnnnnncttcatgaattgagtaaatgacaatcaaatttataaattggaaaatag |
892 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8267411 |
cctcttatcatttgacttcaccccacaaaacattttctatgccaattttttttttaatgaattgaataaatgacaatcaaatttataaattggaaaatat |
8267312 |
T |
|
| Q |
893 |
agaacaagtgttccaaaaagcctc |
916 |
Q |
| |
|
||||||| |||| |||||| |||| |
|
|
| T |
8267311 |
agaacaaatgtttcaaaaaacctc |
8267288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 549 - 732
Target Start/End: Original strand, 14635483 - 14635674
Alignment:
| Q |
549 |
agataataatgagagagtgagtagcagctgcaagtgaaaagggttactttgaaaaccctaattatctattatatataagagtcatgattgcac------- |
641 |
Q |
| |
|
|||||||| || |||||||| |||| | ||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14635483 |
agataatagtgtgagagtgaacagcaacggcaagggaaaatggttcctt-gaaaaccctaattatctattatatataagagtcattcttgcacggactag |
14635581 |
T |
|
| Q |
642 |
agtgtccaattgggctacc--tgtttgttatggattctgattttgttgggttgggccagaaagccttatttaaatatggaacattataacatg |
732 |
Q |
| |
|
||||||||| |||| || | | ||| |||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
14635582 |
agtgtccaaatgggttaactatatttattatggattcgagttttgttgggctgggtcaaaaagccttatttaaatatggaacattatatcatg |
14635674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 271 - 473
Target Start/End: Complemental strand, 15614872 - 15614664
Alignment:
| Q |
271 |
gaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaatt--agaagaaaatcgattgcaaataaaaat |
368 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||| ||| |||||| | || ||||| ||| | |
|
|
| T |
15614872 |
gaaatcgaaatcattatcaaggaatggcatccgatctctacaatgaagctgcaacaactttaacagaaattagagaggaaaataggttacaaattaaact |
15614773 |
T |
|
| Q |
369 |
aaatacgtgcaagaaaaataa---------ttgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaaggggtcgctc |
459 |
Q |
| |
|
| ||| |||| ||||| || | |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
15614772 |
gactacaagcaacaaaaaaaataaaaaatctagaggaaagtggaattagatc-----taaggcatacctgtttgtagttaaacataccaaaggttcgctc |
15614678 |
T |
|
| Q |
460 |
atggcagctatttg |
473 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
15614677 |
atgacagctttttg |
15614664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 19109342 - 19109240
Alignment:
| Q |
246 |
gaaagtggtttgtagatgacaacaggaaatcgaaatcattatcaagtaatagcatccgatctctataatgaagctgcaacaattttagcagaaattagaa |
345 |
Q |
| |
|
||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
19109342 |
gaaagtggtgcgtagaggaccacaagaaatcgaaatcattatcaaagaatagcatcggatctctcaaaagaagctgcaacaattttagcaaaaattagaa |
19109243 |
T |
|
| Q |
346 |
gaa |
348 |
Q |
| |
|
||| |
|
|
| T |
19109242 |
gaa |
19109240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 15972936 - 15973056
Alignment:
| Q |
122 |
aatttaaatgtcaattaaccctaaacataaatataatatctaaagaagattttaaaatactgttttttaaaagccattattttgagaattcaccttgttt |
221 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||| | ||||| ||||||||||||| ||| ||| |
|
|
| T |
15972936 |
aatttgaatgtcatttaacgctaaacataaatataatatctaaagaaaatttttgagtaccgtttttatgaggccatagttttgagaattca-ctttttt |
15973034 |
T |
|
| Q |
222 |
aatcaaagaaatcacacttgat |
243 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
15973035 |
aatcaaagtaatcacacttgat |
15973056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 744 - 910
Target Start/End: Original strand, 12065770 - 12065937
Alignment:
| Q |
744 |
ttatacttccacctctataaagaacaaagcataaaaaatccactttattcc--tcttgtcattagacttcaccccacaaaacattttctatgccgnnnnn |
841 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||||||||| ||||||| || |||||||||| ||||||||||||||||| ||||||| | || |
|
|
| T |
12065770 |
ttatactttcacctctacaaaggacaacccataaaaaattcactttacccccctcttgtcatttgacttcaccccacaaaatattttctctaccaatttt |
12065869 |
T |
|
| Q |
842 |
nnncttcatgaattgagtaaatgacaatcaaatttataaattggaaaatagagaacaagtgttccaaaa |
910 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
12065870 |
taaata-atgaattggataaatgacagtcaaatttataaattggaaaacagaaaacaagtattccaaaa |
12065937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 846 - 910
Target Start/End: Original strand, 15973666 - 15973729
Alignment:
| Q |
846 |
ttcatgaattgagtaaatgacaatcaaatttataaattggaaaatagagaacaagtgttccaaaa |
910 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||| |
|
|
| T |
15973666 |
ttcatgaattgaataaatgacaatcaaatttataaattgg-aaatagagaatatgtattccaaaa |
15973729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 8268149 - 8268233
Alignment:
| Q |
148 |
ataaatataatatctaaagaagattttaaaatactgttttttaaaagccattattttgagaattcaccttgtttaatcaaagaaat |
233 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||||| | ||||||| | |||||||||||| || ||||||||||||||| |
|
|
| T |
8268149 |
ataaatataatatctaaagaagatttttgagtaccatttttaagaagccatcaatttgagaattca-ctattttaatcaaagaaat |
8268233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 19109201 - 19109145
Alignment:
| Q |
390 |
ttgaggaaagtggaattagatctgatttaaggcatacctgtgggtagttaaacataccaagg |
451 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
19109201 |
ttgaggaaactggaattagatct-----aaggcatacctgtgtgtagttaaacaaaccaagg |
19109145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 986 - 1070
Target Start/End: Complemental strand, 6111214 - 6111131
Alignment:
| Q |
986 |
cacggtctagaacctaccacatatttccttcattcattttcccttcccctttctactttgctctcattccttctctctgctcctc |
1070 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
6111214 |
cacggtctagaagctagcacatatttccttcattcattttccctt-cccattctacttcactctcgttccttctctctgttcctc |
6111131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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