View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_3 (Length: 617)
Name: NF8988_low_3
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 3 - 521
Target Start/End: Complemental strand, 6487554 - 6487036
Alignment:
| Q |
3 |
tcttgcaatttcataggtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaa |
102 |
Q |
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| T |
6487554 |
tcttgcaatttcataggtgttgaacatttaacaccatcaaactatatatcaagtcatttgaaacaagtcaaatcatcacttttgaaaatagggatcaaaa |
6487455 |
T |
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| Q |
103 |
ctacactatctattgctatatttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattagtaatttataccttaaaatag |
202 |
Q |
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| T |
6487454 |
ctacactatctattgctatctttcacttgcattgcatttttggggtaaattactagccgtatggttaaaatgctaattaataatttataccttaaaatag |
6487355 |
T |
|
| Q |
203 |
cactcaaaggcaacaaattaagaccacacgaagcgtaataacaagagccaattaatttttgtaccaattgaagcaatcctatattttaccaaggaaaacc |
302 |
Q |
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| T |
6487354 |
cactcaaaggcaacaaattaagaccacacgaagtgtaataacaagagccaattaattcttgtaccaattgaagcaatcctatattttaccaaggaaaacc |
6487255 |
T |
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| Q |
303 |
gaatatctaggacccaaaattataattttgtaagaacctcttaaagaaatggatttgttctacgtgtccatacatgatttgtttactattcatttccaca |
402 |
Q |
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| T |
6487254 |
gaatatctaggacccaaaattataattttgtaagaacctcttaaagaaatggatttgttttacgtgtccatacatgatttgtttactattcatttccaca |
6487155 |
T |
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| Q |
403 |
ccatatttattatatttatacatttttatatgctatctctctttcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatc |
502 |
Q |
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| T |
6487154 |
ccatatttattatatttatacatttttatatgctctctctctttcctctctcccgctcaacttaacagcttcctttcccatttctttagcccaaccaatc |
6487055 |
T |
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| Q |
503 |
aatcaaagtcttcatttag |
521 |
Q |
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| T |
6487054 |
aatcaaagtcttcatttag |
6487036 |
T |
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