View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_6 (Length: 477)
Name: NF8988_low_6
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 7262770 - 7263213
Alignment:
| Q |
20 |
gcatcgacatgtccatccattgctcctataaaaggtctagcaaaaatctatatccacnnnnnnnnnnnnnttaatatcaatagcaaacatagtacaaatc |
119 |
Q |
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| T |
7262770 |
gcatcgacatgtccatccattgctcctataaaaggtctagcaaaaatctatatccacaaaaaaaaa----ttaatatcaatagcaaacatagtacaaatc |
7262865 |
T |
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| Q |
120 |
ctatcctacaaaatcatattcacaatnnnnnnnncacgggtgacaaatatgaccttatccaacttcactgcattaagagcacgaacatattccaccgcct |
219 |
Q |
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| T |
7262866 |
ctatcctacaaaatcatattcacaataaaaaaa-cacgggtgacaaatatgaccttatccaacttcactgcattaagagcacgaacatattccaccgcct |
7262964 |
T |
|
| Q |
220 |
tctcttgaggacgaagaattggatcgtaattacggaacacacgctnnnnnnnncaaaagggcaatgttagaataataaaaagattataaatttacatgaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7262965 |
tctcttgaggacgaagaattggatcgtaattacggaacacacgctaaaaaaaacaaaagggcaatgttagaataataaaaagattataaatttacatgaa |
7263064 |
T |
|
| Q |
320 |
ttaagaagaatgaagaggtttaacaataaagggtcgtgttgtgtgtgaattgaatgaattacctgaaggtcttggcttcgttctcgagtgaattcctcgg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7263065 |
ttaagaagaatgaagaggtttaacaataaagggtcgtgttgtgtgtgaattgaatgaattacctgaaggtcttggcttcgttctcgagtgaattcctcgg |
7263164 |
T |
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| Q |
420 |
tagagcgtgatataactttgatcttcattgtctgtggaacaacaccaaa |
468 |
Q |
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| T |
7263165 |
tagagcgtgatataactttgatcttcattgtctttggaacaacaccaaa |
7263213 |
T |
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