View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8988_low_9 (Length: 419)
Name: NF8988_low_9
Description: NF8988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8988_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 4 - 386
Target Start/End: Complemental strand, 16816193 - 16815811
Alignment:
| Q |
4 |
aagatagtagtagtgtacaatacctcaagagcactaggtctcttgctaggatcaacggttaaaagacttgaaatcaaattctttgctggttgtgaaattc |
103 |
Q |
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| T |
16816193 |
aagatagtagtagtgtacaatacctcaagagcactaggtctcttgctaggatcaacggttaaaagacttgaaatcaaattctttgctggttgtgaaattc |
16816094 |
T |
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| Q |
104 |
ccttccaagtcttctcataaaaactaaaattcccctgttccaaagcattttattttagtaagcaaaagaattgtggaatgaacttttatattctgtaata |
203 |
Q |
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| T |
16816093 |
ccttccaagtcttctcataaaaactaaaattcccctgttccaaaccattttgttttagtaagcaaagtaattgtggaaagaacttctatattctgtaaga |
16815994 |
T |
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| Q |
204 |
gattgtacttacattcattatcatttgttgtttttggcgattattttgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaa |
303 |
Q |
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| T |
16815993 |
gatggtacttacattcattatcatttgttgtttttggcgattattttgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaa |
16815894 |
T |
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| Q |
304 |
ctaaacataccattagtatatgtttggatacgttgagtttaacgaaatcacaaagtatctaacaaaagcttaagtatgtgttt |
386 |
Q |
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| T |
16815893 |
ctaaacataccactagtatatgtttggatacgttgagtttaacgaaatcacaaggtatctaacaaaagcttaagcatgtgttt |
16815811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 16815561 - 16815503
Alignment:
| Q |
297 |
tttaaaactaaacataccattagtatatgtttggatacgttgagtttaacgaaatcaca |
355 |
Q |
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| T |
16815561 |
tttaaaactaaacatactactagtacatgtttggacatgttgagtttgacgaaatcaca |
16815503 |
T |
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