View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8989_high_19 (Length: 250)
Name: NF8989_high_19
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 6386487 - 6386262
Alignment:
| Q |
9 |
tggtggtgtgatttagttgatgcatgtgtaaaaaagttatacaatgtcaatacgtacaagttgaaaacttaatacatttaatttaaattcattaacgaat |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6386487 |
tggtggtgtgatttaattgatgcatgtgtaaaaaagttatacaatatcaatacgcacaagttgaaaacttaatacatttaatttaaattcattaacgaat |
6386388 |
T |
|
| Q |
109 |
atttatataatcaaacatattcgtaagattgttgaaaacgaatgacttaatcacatctaacatcacacataattgattgtgatctacc---agaattcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6386387 |
atttatataatcaaacatattcgtaagattgttgaaaacgaatgacttaatcacatctaacatcacacataattgattgtgatctaccaagagaattcat |
6386288 |
T |
|
| Q |
206 |
tttcggtgtatcaaagttgaactcta |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6386287 |
tttcggtgtatcaaagttgaactcta |
6386262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University