View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8989_high_4 (Length: 588)

Name: NF8989_high_4
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8989_high_4
NF8989_high_4
[»] chr1 (21 HSPs)
chr1 (18-488)||(33177673-33178142)
chr1 (17-359)||(33155012-33155355)
chr1 (34-412)||(33137182-33137549)
chr1 (35-203)||(33290360-33290528)
chr1 (440-488)||(6212963-6213011)
chr1 (303-371)||(33290609-33290677)
chr1 (108-189)||(33121757-33121838)
chr1 (443-488)||(44562826-44562871)
chr1 (435-488)||(52839407-52839460)
chr1 (440-488)||(5832222-5832270)
chr1 (440-488)||(46589165-46589212)
chr1 (440-488)||(52839510-52839558)
chr1 (440-487)||(22344990-22345037)
chr1 (440-488)||(38646573-38646621)
chr1 (441-488)||(630862-630909)
chr1 (442-485)||(13691838-13691881)
chr1 (440-487)||(44514068-44514115)
chr1 (439-488)||(21326461-21326510)
chr1 (440-488)||(14717320-14717367)
chr1 (440-488)||(17579757-17579805)
chr1 (440-480)||(33703594-33703634)
[»] chr4 (19 HSPs)
chr4 (50-174)||(6679763-6679887)
chr4 (440-487)||(4634272-4634319)
chr4 (440-487)||(9661842-9661889)
chr4 (439-488)||(23067925-23067974)
chr4 (443-488)||(28588553-28588598)
chr4 (444-485)||(1657650-1657691)
chr4 (440-485)||(3673612-3673657)
chr4 (439-488)||(52555798-52555847)
chr4 (443-488)||(54420789-54420834)
chr4 (444-488)||(16991865-16991909)
chr4 (440-488)||(41486564-41486612)
chr4 (445-485)||(44375344-44375384)
chr4 (440-487)||(14542590-14542637)
chr4 (440-486)||(43156765-43156812)
chr4 (440-479)||(46729005-46729044)
chr4 (441-487)||(30416700-30416746)
chr4 (444-488)||(3169033-3169077)
chr4 (448-484)||(34115733-34115769)
chr4 (443-487)||(42972030-42972074)
[»] chr3 (18 HSPs)
chr3 (80-174)||(55124991-55125082)
chr3 (440-488)||(20201135-20201183)
chr3 (440-488)||(20203317-20203365)
chr3 (440-487)||(1165474-1165521)
chr3 (443-488)||(50519782-50519827)
chr3 (440-488)||(1220292-1220340)
chr3 (440-488)||(22844040-22844088)
chr3 (443-488)||(35501836-35501881)
chr3 (440-488)||(4019591-4019638)
chr3 (440-488)||(22286826-22286874)
chr3 (440-488)||(41882485-41882533)
chr3 (440-488)||(45664218-45664266)
chr3 (440-487)||(43029672-43029719)
chr3 (440-486)||(913397-913443)
chr3 (440-486)||(42106100-42106146)
chr3 (446-488)||(53426799-53426841)
chr3 (455-488)||(21803534-21803567)
chr3 (443-488)||(25374147-25374192)
[»] chr8 (13 HSPs)
chr8 (440-488)||(10042750-10042798)
chr8 (440-488)||(9270010-9270058)
chr8 (442-488)||(9992656-9992702)
chr8 (440-485)||(37658955-37659000)
chr8 (444-488)||(31874077-31874121)
chr8 (440-487)||(15665528-15665575)
chr8 (439-488)||(8054885-8054934)
chr8 (440-488)||(26937514-26937562)
chr8 (440-487)||(16937417-16937464)
chr8 (440-487)||(44295305-44295352)
chr8 (440-485)||(14530988-14531033)
chr8 (440-487)||(32256799-32256847)
chr8 (440-488)||(36545858-36545906)
[»] chr6 (9 HSPs)
chr6 (439-488)||(19759776-19759825)
chr6 (440-488)||(16913317-16913365)
chr6 (440-487)||(12576556-12576603)
chr6 (440-482)||(7049236-7049278)
chr6 (443-488)||(32804286-32804331)
chr6 (440-488)||(548942-548990)
chr6 (440-488)||(32457635-32457683)
chr6 (440-486)||(4663899-4663945)
chr6 (454-488)||(20845011-20845045)
[»] chr2 (26 HSPs)
chr2 (439-488)||(7640433-7640482)
chr2 (443-487)||(3602977-3603021)
chr2 (440-488)||(44167786-44167834)
chr2 (440-487)||(3390421-3390468)
chr2 (440-487)||(25771434-25771481)
chr2 (441-487)||(10589028-10589074)
chr2 (440-485)||(6089882-6089927)
chr2 (440-488)||(16880036-16880084)
chr2 (440-488)||(25516483-25516531)
chr2 (444-488)||(29812692-29812736)
chr2 (440-487)||(15674052-15674099)
chr2 (440-487)||(40125378-40125425)
chr2 (440-488)||(19581080-19581128)
chr2 (443-487)||(27024217-27024261)
chr2 (440-488)||(27191412-27191460)
chr2 (440-488)||(27841226-27841274)
chr2 (440-488)||(41176851-41176899)
chr2 (440-488)||(42105829-42105877)
chr2 (440-477)||(17037737-17037774)
chr2 (440-485)||(37883642-37883687)
chr2 (440-488)||(41841938-41841987)
chr2 (440-488)||(3464948-3464996)
chr2 (444-488)||(5930416-5930460)
chr2 (440-472)||(19953373-19953405)
chr2 (440-488)||(25623122-25623170)
chr2 (440-488)||(26491292-26491340)
[»] chr7 (17 HSPs)
chr7 (440-484)||(47749723-47749767)
chr7 (439-488)||(43807227-43807276)
chr7 (440-488)||(23732470-23732518)
chr7 (440-488)||(24470384-24470432)
chr7 (440-488)||(24475332-24475380)
chr7 (439-487)||(30992901-30992949)
chr7 (440-487)||(28015345-28015392)
chr7 (441-485)||(38649438-38649482)
chr7 (440-488)||(40775256-40775304)
chr7 (443-487)||(49166919-49166963)
chr7 (444-486)||(24045311-24045353)
chr7 (443-488)||(25855297-25855342)
chr7 (440-485)||(29804756-29804801)
chr7 (443-488)||(35141830-35141875)
chr7 (443-488)||(47156388-47156433)
chr7 (440-488)||(8319303-8319351)
chr7 (440-488)||(8611699-8611747)
[»] chr5 (16 HSPs)
chr5 (440-488)||(9035025-9035073)
chr5 (440-488)||(34893993-34894041)
chr5 (440-488)||(28618593-28618641)
chr5 (435-487)||(31645813-31645865)
chr5 (440-488)||(37424982-37425030)
chr5 (440-487)||(6887256-6887303)
chr5 (440-487)||(29310427-29310474)
chr5 (440-487)||(33486648-33486695)
chr5 (440-488)||(6647990-6648038)
chr5 (447-487)||(18472803-18472843)
chr5 (440-488)||(19646118-19646166)
chr5 (440-488)||(41988173-41988221)
chr5 (444-487)||(2415393-2415436)
chr5 (440-487)||(41554475-41554522)
chr5 (441-486)||(8812231-8812276)
chr5 (444-488)||(41358031-41358076)
[»] scaffold0011 (1 HSPs)
scaffold0011 (443-488)||(11011-11056)
[»] scaffold0045 (1 HSPs)
scaffold0045 (440-488)||(9725-9773)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 33178142 - 33177673
Alignment:
Q  18 atagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  33178142 atagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagatattcagcatcaaa 33178043  T
Q  118 cttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatatctccatttccaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33178042 cttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatatctccatttccaatt 33177943  T
Q  218 tgaataggtgatgtcactaggcgaaccatattgattcagagagagnnnnnnnngtgcactagaactactcttgtgggttactatggtttagaagcaaaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  33177942 tgaataggtgatgtcactaggcgaaccatattgattcagagaga--aaaaaaagtgcactagaactactcttgtgggttactatggtttagaagcaaaga 33177845  T
Q  318 ttttgtgttctttgtgtggttgctttagtgccctatttatagccttgagagctgcaagatttttcttttgtggaaaggtaataggtttttattt-tattt 416  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  33177844 ttttgcgtgctttgtgtggttgctttagtgccctatttatagccttgagagctgcaagatttttcttttgtggaaaggtaataggtttttatttattttt 33177745  T
Q  417 tctcttaggataagccttttaaggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  33177744 tctcttaggataagccttttaaggaggggtgatttatggctaatttttgactcaaaatcatccatctaactc 33177673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 33155355 - 33155012
Alignment:
Q  17 aatagatgcaaatatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaa 116  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  33155355 aataggtgcaaatatatacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagatattcagcatcaa 33155256  T
Q  117 acttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatatctccatttccaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33155255 acttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatatctccatttccaat 33155156  T
Q  217 ttgaataggtgatgtcactaggcgaaccatattgattcagagag-agnnnnnnnngtgcactagaactactcttgtgggttactatggtttagaagcaaa 315  Q
     ||||||| |||| |   |||||||| ||||||||||||||||| |         ||||||||||| |||||||||||||||||||||||||||||||||    
T  33155155 gtgaatagatgatcttgataggcgaatcatattgattcagagagaaaaaaaaaaagtgcactagaattactcttgtgggttactatggtttagaagcaaa 33155056  T
Q  316 gattttgtgttctttgtgtggttgctttagtgccctatttatag 359  Q
    |||||||||| |||||||||||||||| ||||||||||||||||    
T  33155055 gattttgtgtgctttgtgtggttgcttcagtgccctatttatag 33155012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 412
Target Start/End: Complemental strand, 33137549 - 33137182
Alignment:
Q  34 acatacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactatgg 133  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33137549 acatacttgcagaacgttatcaacaacatgggttgaacgtgtaaggatgttcccagcaatgttgaaaagagattcagcatcaaacttagtgtcactatgg 33137450  T
Q  134 acatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatatctccatttccaatttgaataggtgatgtca 233  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||   |||| ||||| |||||| |||||  ||    
T  33137449 acatgagttacataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaatggcattatcattaccaatgtgaataagtgatcgca 33137350  T
Q  234 ctaggcgaaccatattgattcagagagagnnnnnnnngtgcactagaactactcttgtgggttactatggtttagaagcaaagattttgtgttctttgtg 333  Q
    |||||| ||||||||||||||||| | |         ||||||||||| |||| ||||||||   |||||||||||||||||||||||||||  ||||||    
T  33137349 ctaggctaaccatattgattcagacaaa-----aaaagtgcactagaattacttttgtgggt---tatggtttagaagcaaagattttgtgtgttttgtg 33137258  T
Q  334 tggttgctttagtgccctatttatagccttgagagctgcaagatttttcttttgtggaaaggtaataggtttttatttt 412  Q
    |||| |||| ||||||||||||||||||||  ||| ||||||| ||||||||||||||| |||||  | ||||||||||    
T  33137257 tggtagcttcagtgccctatttatagcctt--gagttgcaaga-ttttcttttgtggaagggtaaatgctttttatttt 33137182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 33290360 - 33290528
Alignment:
Q  35 catacttgcacaaagttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactatgga 134  Q
    ||||||||||||| ||| ||||||| || |||||||||  ||||||||||  ||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  33290360 catacttgcacaacgttttcaacaatataggttgaacgcctaagaatgtttgcagcaatgttgaaaagagattcaacatcaaacttggtgtcactatgga 33290459  T
Q  135 catgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataatat 203  Q
    |||| ||||||||||||||  ||| ||| |||  |||||||||| | |||||||||| || ||||||||    
T  33290460 catgggttgaataaatctcccccataatttgtatatcagacatgatcaaagggttattgtgaataatat 33290528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 6213011 - 6212963
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6213011 gaggggtgatttatggtcaatttttgacccaaaatcacacctctaactc 6212963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 33290609 - 33290677
Alignment:
Q  303 gtttagaagcaaagattttgtgttctttgtgtggttgctttagtgccctatttatagccttgagagctg 371  Q
    |||||||||| |||||||| |||  |||| ||||| |||| ||||||||||||||||||||||||||||    
T  33290609 gtttagaagctaagattttttgtgatttgagtggtagcttcagtgccctatttatagccttgagagctg 33290677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 33121757 - 33121838
Alignment:
Q  108 cagcatcaaacttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggtt 189  Q
    |||||||||| || |||||||| ||||||||||| || ||||| |  |||||||| || ||||||||||||||||| |||||    
T  33121757 cagcatcaaattttgtgtcactgtggacatgagtggagtaaatttgatccaaaatctggtcatcagacatggttaatgggtt 33121838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 44562871 - 44562826
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcacccctctaactc 44562826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 435 - 488
Target Start/End: Original strand, 52839407 - 52839460
Alignment:
Q  435 ttaaggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  52839407 ttaaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactc 52839460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 5832222 - 5832270
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  5832222 gaggggtgatttagggtcaatttttgaccctaaatcacccctctaactc 5832270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 46589165 - 46589212
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  46589165 gaggggtgatttatgatcaatttttgactcaaaatca-ccctctaactc 46589212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 52839510 - 52839558
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  52839510 gaggggtgatttatgatcaatttttgacccaaaatcacccttctaactc 52839558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 22345037 - 22344990
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||    
T  22345037 gaggggtgatttaggttcaatttttgacccaaaatcacccctctaact 22344990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 38646573 - 38646621
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| ||||||||||||||||||||||| ||||||||||| | ||||||    
T  38646573 gaggagtgatttatggtcaatttttgacccaaaatcacccatgtaactc 38646621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 630909 - 630862
Alignment:
Q  441 aggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||| |||||||||||||| | ||||||||| ||||||||    
T  630909 aggggtgatttagggtcaatttttgaccctaaatcacccatctaactc 630862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 485
Target Start/End: Complemental strand, 13691881 - 13691838
Alignment:
Q  442 ggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    |||||| |||| |||||||||||||| |||||||||||||||||    
T  13691881 ggggtggtttagggtcaatttttgacccaaaatcacccctctaa 13691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 44514115 - 44514068
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||| || |||||    
T  44514115 gaggggtgatttagggtcaatttttgacccaaaatcacctctttaact 44514068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 21326461 - 21326510
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| | |||||||||||   |||||||||||||||||||    
T  21326461 ggaggggtgatttaggatcaatttttgaacaaaaatcacccctctaactc 21326510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 14717367 - 14717320
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  14717367 gaggggtgatttagggtcaatttttgacttaaattca-ccctctaactc 14717320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 17579757 - 17579805
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||| ||| |||||||||||||  |||||||| |||||||||||    
T  17579757 gaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactc 17579805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 33703634 - 33703594
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccc 480  Q
    ||||| ||||||||||||||||||| || ||||||||||||    
T  33703634 gagggatgatttatggtcaattttttacccaaaatcacccc 33703594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 6679887 - 6679763
Alignment:
Q  50 ttatcaacaacatgggttgaacgtgtaagaatgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactatggacatgagttgaataaa 149  Q
    ||||||||||||||| |||||||   ||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6679887 ttatcaacaacatggattgaacgcacaaggatgtttccagcaatgttgaaaatatattcagcatcaaacttagtatcactatagacatgagttgaataaa 6679788  T
Q  150 tctcttccaaaatgtgttcatcaga 174  Q
    |||||||||||||||||||||||||    
T  6679787 tctcttccaaaatgtgttcatcaga 6679763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 4634272 - 4634319
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  4634272 gaggggtgatttaaggtcaatttttgacccaaaatcacccctctaact 4634319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 9661842 - 9661889
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  9661842 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 9661889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 23067974 - 23067925
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  23067974 ggaggggtgatttagggtcaatttttgaccctaaatcacccctctaactc 23067925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 28588553 - 28588598
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  28588553 gggtgatttagggtcaatttttgacccaaaatcacccctctaactc 28588598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 485
Target Start/End: Complemental strand, 1657691 - 1657650
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  1657691 ggtgatttagggtcaatttttgacccaaaatcacccctctaa 1657650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 3673612 - 3673657
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||    
T  3673612 gaggggtgatttagggtcaatttttgaccccaaatcacccctctaa 3673657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 52555847 - 52555798
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| || ||||||||||| |||||||||| |||||||||    
T  52555847 ggaggggtgatttagggacaatttttgacccaaaatcacctctctaactc 52555798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 54420834 - 54420789
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||    
T  54420834 gggtgatttagggtcaatttttgacccaaaatcactcctctaactc 54420789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 16991865 - 16991909
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||    
T  16991865 ggtgatttagggtcaatttttgacccaaaatcacccatctaactc 16991909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 41486564 - 41486612
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||| ||||| |||||||||||||  ||||||||||||||||||||    
T  41486564 gaggggttatttagggtcaatttttgatccaaaatcacccctctaactc 41486612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 44375384 - 44375344
Alignment:
Q  445 gtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  44375384 gtgatttaaggtcaatttttgactcaaaatcactcctctaa 44375344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 14542637 - 14542590
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||| | ||||||||    
T  14542637 gaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 14542590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 43156765 - 43156812
Alignment:
Q  440 gaggggtgatttatgg-tcaatttttgactcaaaatcacccctctaac 486  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||    
T  43156765 gaggggtgatttacgggtcaatttttgacccaaaatcacccctctaac 43156812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 479
Target Start/End: Complemental strand, 46729044 - 46729005
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcaccc 479  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  46729044 gaggggtgatttagggtcaatttttgacccaaaatcaccc 46729005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 30416746 - 30416700
Alignment:
Q  441 aggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||| |||||||||||||||||||  ||||||||| |||||||||    
T  30416746 aggggtaatttatggtcaatttttgaaccaaaatcacacctctaact 30416700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 3169033 - 3169077
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||  ||||||| ||||| ||||||||||||||||||||    
T  3169033 ggtgatttagagtcaattattgacccaaaatcacccctctaactc 3169077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 484
Target Start/End: Complemental strand, 34115769 - 34115733
Alignment:
Q  448 atttatggtcaatttttgactcaaaatcacccctcta 484  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  34115769 atttagggtcaatttttgacccaaaatcacccctcta 34115733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 42972030 - 42972074
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||||||| |||||||||||||| ||||||||| | |||||||    
T  42972030 gggtgatttagggtcaatttttgacccaaaatcactcatctaact 42972074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 55124991 - 55125082
Alignment:
Q  80 atgttcccagcaatgttgaaaagatattcagcatcaaacttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcaga 174  Q
    ||||| |||||||||||||||||||||||||| ||||||||||  ||||| |||||   |||||||||||||||||  |||||||||||||||||    
T  55124991 atgtttccagcaatgttgaaaagatattcagcgtcaaacttagcatcactgtggac---agttgaataaatctcttgtaaaatgtgttcatcaga 55125082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 20201183 - 20201135
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  20201183 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactc 20201135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 20203365 - 20203317
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  20203365 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactc 20203317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 1165521 - 1165474
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  1165521 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 1165474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 50519782 - 50519827
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  50519782 gggtgatttagggtcaatttttgacccaaaatcacccctctaactc 50519827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 1220340 - 1220292
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  1220340 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactc 1220292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 22844040 - 22844088
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  22844040 gagggctgatttaaggtcaatttttgacccaaaatcacccctctaactc 22844088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 35501881 - 35501836
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||    
T  35501881 gggtgatttagggttaatttttgacccaaaatcacccctctaactc 35501836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 4019591 - 4019638
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  4019591 gaggggtgatttagggtcaatttt-gactcaaaatcacctctctaactc 4019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 22286874 - 22286826
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||||    
T  22286874 gaggggtgatttagggtcaatttttgacctaaaattacccctctaactc 22286826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 41882533 - 41882485
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| |||||||| |||||||||||||| |||||| |||||||||||||    
T  41882533 gaggagtgatttagggtcaatttttgacccaaaattacccctctaactc 41882485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 45664218 - 45664266
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||    
T  45664218 gaggggtgatttaggatcaaattttgacccaaaatcacccctctaactc 45664266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 43029672 - 43029719
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| | ||| |||||||| |||||||||||||||||||    
T  43029672 gaggggtgatttaggatcattttttgacccaaaatcacccctctaact 43029719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 913443 - 913397
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaac 486  Q
    ||||||| ||| || ||||||||||||| ||||||||||||||||||    
T  913443 gaggggtaattcatagtcaatttttgacccaaaatcacccctctaac 913397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 42106100 - 42106146
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaac 486  Q
    ||||||||||||| ||||||||||||||  |||||||||| ||||||    
T  42106100 gaggggtgatttagggtcaatttttgacctaaaatcacccatctaac 42106146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 53426799 - 53426841
Alignment:
Q  446 tgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||| ||||||||||| || ||||||||||||||||||||    
T  53426799 tgatttagggtcaattttttacgcaaaatcacccctctaactc 53426841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 488
Target Start/End: Original strand, 21803534 - 21803567
Alignment:
Q  455 gtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||||||||||||||||    
T  21803534 gtcaatttttgacccaaaatcacccctctaactc 21803567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 25374192 - 25374147
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| ||| ||||||||||  |||||||||||||||||||    
T  25374192 gggtgatttagggttaatttttgacctaaaatcacccctctaactc 25374147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 10042750 - 10042798
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10042750 gaggggtgatttatggtcaatttttgacccaaaatcacccctctaactc 10042798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 9270010 - 9270058
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  9270010 gaggggtgatttatgatcaatttttgacccaaaatcacccctctaactc 9270058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 488
Target Start/End: Original strand, 9992656 - 9992702
Alignment:
Q  442 ggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9992656 ggggtgatttagggtcaatttttgacccaaaatcacccctctaactc 9992702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 37658955 - 37659000
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  37658955 gaggggtgatttagggtcaatttttgacacaaaatcacccctctaa 37659000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 31874077 - 31874121
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  31874077 ggtgatttagggtcaatttttgacccaaaatcacccctctaactc 31874121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 15665528 - 15665575
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  15665528 gaggggtgatttagggtcaacttttgacacaaaatcacccctctaact 15665575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 8054934 - 8054885
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| |||||||||||||| |||||| | |||||||||||    
T  8054934 ggaggggtgatttagggtcaatttttgacccaaaattatccctctaactc 8054885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 26937514 - 26937562
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  26937514 gaggggttatttagggttaagttttgactcaaaatcacccctctaactc 26937562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 16937464 - 16937417
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||  |||||||| ||||||||||    
T  16937464 gaggggtgatttagggtcaatttttgatccaaaatcatccctctaact 16937417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 44295305 - 44295352
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||| | ||||||||    
T  44295305 gaggggtgatttagggtcaatttttgacccaaaatcatctctctaact 44295352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 14531033 - 14530988
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    |||||||| |||| |||||||||||||||| ||||||||| |||||    
T  14531033 gaggggtggtttagggtcaatttttgactccaaatcacccttctaa 14530988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 32256847 - 32256799
Alignment:
Q  440 gaggggtgatttatggtcaat-ttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| ||||||| |||| || |||||||||||||||||||    
T  32256847 gaggggtgatttagggtcaatttttttacccaaaatcacccctctaact 32256799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 36545906 - 36545858
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||| ||||||| ||||||||| |||| ||| ||||||||||||||||    
T  36545906 gagggatgatttaaggtcaatttgtgacccaatatcacccctctaactc 36545858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 19759776 - 19759825
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  19759776 ggaggggtgatttagggtcaatttttgacccaaaatcacccctctaactc 19759825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 16913317 - 16913365
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  16913317 gaggggtgatttagggtcaatttttgacccgaaatcacccctctaactc 16913365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 12576603 - 12576556
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||    
T  12576603 gaggggtgatttagggtcaatttttgaccctaaatcacccctctaact 12576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 7049236 - 7049278
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctc 482  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  7049236 gaggggtgatttagggtcaacttttgactcaaaatcacccctc 7049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 32804286 - 32804331
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||    
T  32804286 gggtgatttagggtcaatttttgacccaaaatcacccatctaactc 32804331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 548990 - 548942
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| ||||| || |||||||||||||| ||||||||||||||||||||    
T  548990 gaggagtgatataaggtcaatttttgacccaaaatcacccctctaactc 548942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 32457635 - 32457683
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||  ||||||||||||| ||||||||||| ||||||||    
T  32457635 gaggggtgatttagcgtcaatttttgacccaaaatcacccatctaactc 32457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 4663945 - 4663899
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaac 486  Q
    |||||||||||   |||||||||||||| ||||||||||||||||||    
T  4663945 gaggggtgattgtgggtcaatttttgacccaaaatcacccctctaac 4663899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Original strand, 20845011 - 20845045
Alignment:
Q  454 ggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| ||||||||||||||||||||    
T  20845011 ggtcaatttttgacccaaaatcacccctctaactc 20845045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 7640482 - 7640433
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  7640482 ggaggggtgatttagggtcaatttttgacccaaaatcacccctctaactc 7640433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 3602977 - 3603021
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  3602977 gggtgatttatggtcaacttttgactcaaaatcacccctctaact 3603021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 44167834 - 44167786
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  44167834 gaggggtgatatatggtcaatttttgacccaaaatcacccctctaactc 44167786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 3390421 - 3390468
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  3390421 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 3390468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 25771434 - 25771481
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25771434 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaact 25771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 10589028 - 10589074
Alignment:
Q  441 aggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  10589028 aggggtgatttagggtcaatttttgacccaaaatcacccctctaact 10589074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 6089882 - 6089927
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  6089882 gaggggtgatttaaggtcaatttttgacccaaaatcacccctctaa 6089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 16880084 - 16880036
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  16880084 gaggggtgatttttggtcaatttttgacccaaaatcacccctctcactc 16880036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 25516483 - 25516531
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  25516483 gaggggtgatttagggtcaatatttgacccaaaatcacccctctaactc 25516531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 488
Target Start/End: Complemental strand, 29812736 - 29812692
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  29812736 ggtgatttagggtcaatttttgacacaaaatcacccctctaactc 29812692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 15674099 - 15674052
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  15674099 gaggggtgatttagggtcaatttttgacccaaaatcactcctctaact 15674052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 40125378 - 40125425
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  40125378 gaggggtgatttagggttaatttttgacccaaaatcacccctctaact 40125425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 19581128 - 19581080
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||  ||||||||||| || ||||||||||||||||||||    
T  19581128 gaggggtgattttgggtcaatttttaacacaaaatcacccctctaactc 19581080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 27024261 - 27024217
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  27024261 gggtgatttagggtcattttttgacccaaaatcacccctctaact 27024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 27191460 - 27191412
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  27191460 gagggatgatttagggtcaatttttgaccctaaatcacccctctaactc 27191412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 27841274 - 27841226
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  27841274 gagggatgatttagggtcaatttttgaccctaaatcacccctctaactc 27841226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 41176851 - 41176899
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  41176851 gaggggtgatttagggtcaatttttgacccaaaaccacccatctaactc 41176899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 42105877 - 42105829
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||| |||| |||||||||||||| |||||||||| |||||||||    
T  42105877 gaggggtgctttagggtcaatttttgacccaaaatcaccactctaactc 42105829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 17037774 - 17037737
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcac 477  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  17037774 gaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 37883642 - 37883687
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||    
T  37883642 gaggggtgatttagggtcaatttttaatccaaaatcacccctctaa 37883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 41841938 - 41841987
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactc-aaaatcacccctctaactc 488  Q
    ||||| |||||||||||||||||||||| | |||||||||||| ||||||    
T  41841938 gagggttgatttatggtcaatttttgacccaaaaatcacccctttaactc 41841987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 3464948 - 3464996
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||  |||||||||| | |||||||    
T  3464948 gaggggtgatttagggtcaatttttgatccaaaatcaccacactaactc 3464996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 5930416 - 5930460
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||| ||| |||||||||| |||||||| |||||||||||    
T  5930416 ggtgatttagggttaatttttgacccaaaatcatccctctaactc 5930460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 472
Target Start/End: Original strand, 19953373 - 19953405
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaa 472  Q
    |||||||||||||||||||||||||||| ||||    
T  19953373 gaggggtgatttatggtcaatttttgacccaaa 19953405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 25623170 - 25623122
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||  |||||||||||| ||||||||||| | ||||||    
T  25623170 gaggggtgatttattatcaatttttgacccaaaatcacccatataactc 25623122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 26491292 - 26491340
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||| ||||| | |||||||||||| ||||||||||||| ||||||    
T  26491292 gaggggtaatttaagttcaatttttgacccaaaatcacccctttaactc 26491340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 484
Target Start/End: Original strand, 47749723 - 47749767
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctcta 484  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  47749723 gaggggtgatttatggtcaatttttgacccaaaatcacccctcta 47749767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 43807276 - 43807227
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  43807276 ggagaggtgatttatggtcaatttttgacccaaaatcacctctctaactc 43807227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 23732518 - 23732470
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  23732518 gaggggtgatttaaggtcaatttttgactcaaaatcacttctctaactc 23732470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 24470384 - 24470432
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  24470384 gaggggtgatttaggggcaatttttgacccaaaatcacccctctaactc 24470432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 24475332 - 24475380
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  24475332 gaggggtgatttaggggcaatttttgacccaaaatcacccctctaactc 24475380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 30992949 - 30992901
Alignment:
Q  439 ggaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||||||    
T  30992949 ggaggggtgatttaaggttaatttttgacccaaaatcacccctctaact 30992901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 28015345 - 28015392
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||    
T  28015345 gaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 28015392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 38649482 - 38649438
Alignment:
Q  441 aggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||    
T  38649482 aggggtgatttagagtcaatttttgacccaaaatcacccctctaa 38649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 40775256 - 40775304
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  40775256 gaggggtgatttagggtcaatttttgatccaaaatcacccctataactc 40775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 49166919 - 49166963
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||    
T  49166919 gggtgatttagggtcaatttttgacctaaaatcacccctctaact 49166963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 486
Target Start/End: Complemental strand, 24045353 - 24045311
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaac 486  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||    
T  24045353 ggtgatttaaggtcaatttttgacccaaaatcacccgtctaac 24045311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 25855342 - 25855297
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||  |||||||| |||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatcatccctctaactc 25855297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 29804801 - 29804756
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaa 485  Q
    |||||||| |||| |||||||||||||| | |||||||||||||||    
T  29804801 gaggggtggtttagggtcaatttttgaccccaaatcacccctctaa 29804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 35141875 - 35141830
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| ||||||||||||||  |||||||||| ||||||||    
T  35141875 gggtgatttagggtcaatttttgaccaaaaatcacccttctaactc 35141830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 47156388 - 47156433
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||| |||||||||||||  |||||||| |||||||||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatcatccctctaactc 47156433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 8319303 - 8319351
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||| ||||||||||||||| ||||||| ||||||||||| | ||||||    
T  8319303 gaggagtgatttatggtcaacttttgacccaaaatcacccatgtaactc 8319351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 8611747 - 8611699
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||  |||||||| ||| ||||||||||||||||    
T  8611747 gaggggtgatttagggtctctttttgacccaatatcacccctctaactc 8611699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 9035073 - 9035025
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  9035073 gaggggtgatttatgatcaatttttgactcaaaatcatccctctaactc 9035025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 34894041 - 34893993
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34894041 gaggggtgatttacggtcaatttttgacccaaaatcacccctctaactc 34893993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 28618593 - 28618641
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  28618593 gaggggtgatttaaggtcaatttttaacccaaaatcacccctctaactc 28618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 487
Target Start/End: Original strand, 31645813 - 31645865
Alignment:
Q  435 ttaaggaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||| ||||||||||||| |||||||||||||  |||||||||||||||||||    
T  31645813 ttaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 31645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 37424982 - 37425030
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  37424982 gaggggtgatttatggtcaatttctgacccaaaatcacgcctctaactc 37425030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 6887303 - 6887256
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| ||||||||||| || |||||||||||||||||||    
T  6887303 gaggggtgatttagggtcaatttttaacccaaaatcacccctctaact 6887256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 29310474 - 29310427
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||    
T  29310474 gaggggtgatttagggtcaatttttgatccaaaatcacccctctaact 29310427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 487
Target Start/End: Complemental strand, 33486695 - 33486648
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  33486695 gaggggtgatttagggtcaatttttgacccaaaatcacccatctaact 33486648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 6648038 - 6647990
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||| ||||||||||||| ||||||| ||||||||| ||||||||||    
T  6648038 gaggggcgatttatggtcaaattttgacccaaaatcactcctctaactc 6647990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 487
Target Start/End: Complemental strand, 18472843 - 18472803
Alignment:
Q  447 gatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  18472843 gatttagggtcaatttttgacccaaaatcacccctctaact 18472803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 19646166 - 19646118
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||| |||| ||||||| |||||| ||||||||||||||||||||    
T  19646166 gaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactc 19646118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 41988173 - 41988221
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||||||||||| | ||||||||||| |||||||| ||||||||||||    
T  41988173 gaggggtgatttaggatcaatttttgattcaaaatcgcccctctaactc 41988221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 487
Target Start/End: Original strand, 2415393 - 2415436
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcacccttctaact 2415436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 487
Target Start/End: Original strand, 41554475 - 41554522
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaact 487  Q
    ||||||||||||| | |||||||||||  |||||||||||||||||||    
T  41554475 gaggggtgatttaggatcaatttttgatccaaaatcacccctctaact 41554522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 8812276 - 8812231
Alignment:
Q  441 aggggtgatttatggtcaatttttgactcaaaatcacccctctaac 486  Q
    ||||||||| || ||||||||||| || ||||||||||||||||||    
T  8812276 aggggtgatatagggtcaatttttaacccaaaatcacccctctaac 8812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 41358031 - 41358076
Alignment:
Q  444 ggtgatttatggtcaatttttgactcaaaatca-cccctctaactc 488  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||    
T  41358031 ggtgatttagggtcaatttttgacccaaaatcaccccctctaactc 41358076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 11011 - 11056
Alignment:
Q  443 gggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    |||||||||  ||||||||||||||| |||||||||||||||||||    
T  11011 gggtgattttgggtcaatttttgacttaaaatcacccctctaactc 11056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 9773 - 9725
Alignment:
Q  440 gaggggtgatttatggtcaatttttgactcaaaatcacccctctaactc 488  Q
    ||||| ||||||| |||||||||||||| ||||||||| ||||||||||    
T  9773 gagggatgatttagggtcaatttttgacccaaaatcactcctctaactc 9725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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