View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_high_5 (Length: 565)
Name: NF8989_high_5
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Original strand, 45190357 - 45190894
Alignment:
| Q |
18 |
attgttagcaaaagtcttgatcaattatatttcaatgtatacatcaatgggattgaggttgtggaagctttggacctttcatctgaaaccaaagccttat |
117 |
Q |
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| T |
45190357 |
attgttagcaaaagtcttgatcaattatatttcaatgtatacatcaatgggattgaggttgtggaagctttggacctttcatctgaaaccaaagccttat |
45190456 |
T |
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| Q |
118 |
caacagctgtttacaaggactttgtgcttggttcatgtaatatcacaaatggttccatcttgattcaagtaggaccaacatatcttcaacaaagtacaac |
217 |
Q |
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| T |
45190457 |
caacagctgtttacaaggactttgtgcttggttcatgtaatatcacaaatggttccatcttgattcaagtaggaccaacttatcttcaacaaagtacaac |
45190556 |
T |
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| Q |
218 |
caacgcaattttgaatggatttgaggtgatgaaaatgagcaatagtgccaatagtttggatggttttttctctgttgatggaaaatataaaggaccaagt |
317 |
Q |
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| T |
45190557 |
caacgcaattttgaatggatttgaggtgatgaaaatgagcaatagtgccaatagtttggatggttttttctctgttgatggaaaatataaaggaccaagt |
45190656 |
T |
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| Q |
318 |
gtaacatccaacgtaatgaaaattgttgctattgctggtttggtattggctgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaa |
417 |
Q |
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| T |
45190657 |
gtaacatccaacgtaatgaaaattgttgctattgctggtttggtattggctgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaa |
45190756 |
T |
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| Q |
418 |
gacctttagattggaaagaaagtagaggtttctcttcatggctcttacctctttgtccaaaatctnnnnnnngttgcagtgcaaacgcaaatgcatttga |
517 |
Q |
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| T |
45190757 |
gacctttagattggaaagaaagtagaggtttctcttcatggctcttacctctttgtccaaaatctaaaaaaagttgcagtgcaaacgcaaatgcatttga |
45190856 |
T |
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| Q |
518 |
ttcacctaagaataagcatggtggtcatgatgtccatc |
555 |
Q |
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| T |
45190857 |
ttcacctaagaataagcatggtggtcatgatgttcatc |
45190894 |
T |
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