View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_high_7 (Length: 485)
Name: NF8989_high_7
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 9032086 - 9031629
Alignment:
| Q |
16 |
agacaaatgcaaaaatatatcaaaatagatataatataagtactttggatttttcaatactgtaattatacaaatcatcacaagtggagtttattgctac |
115 |
Q |
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| T |
9032086 |
agacaaatgcaaaaatatatcaaaatagatataatataagtactttggatttttcaatactgtaattatacaaatcatcacaagtggagtttattgctac |
9031987 |
T |
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| Q |
116 |
tttctagaataacgaatggatatcaatgtacaagatatatggatgaccaacataacatgcaagtcagaacaaacttattcatacattatttttgtaaatt |
215 |
Q |
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| T |
9031986 |
tttctagaataacgaatggatatcaatgtacaagatatatggatgaccaacataacatgcaagtcagaacaaacttattcatacattttttttgtaaatt |
9031887 |
T |
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| Q |
216 |
aatcaagtaaaatgctatttatttccactgatcctgtggggtatatgaagagagtgtgtaattatatcattaattacactagcttaatttgttcaagtga |
315 |
Q |
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| T |
9031886 |
aatcaagtaaaatgctatttattttcactgatcctgtggggtatatgaagagagtgtgtaattatatcattaattacactagcttaatttgttcaagtga |
9031787 |
T |
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| Q |
316 |
tgattgcaccccgatctcattgcccccatttgctttcaaggattctttataggtcattccaatgtaattttgtggattttcatcatcaacaaattctgta |
415 |
Q |
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| T |
9031786 |
tgattgcaccccgatctcattgcccccatttgctttcaaggattctttataggtcattccaatgtaattatgtggattttcatcatcaacaaattctgta |
9031687 |
T |
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| Q |
416 |
cccgggacaatgaatttgtctaacgaaggtccatgaagggtaacaacagagatccttt |
473 |
Q |
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| T |
9031686 |
cctgggacaataaatttgtctaacgaaggtccatgaagagtaacaacagatatccttt |
9031629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 289 - 473
Target Start/End: Complemental strand, 9039223 - 9039039
Alignment:
| Q |
289 |
ttacactagcttaatttgttcaagtgatgattgcaccccgatctcattgcccccatttgctttcaaggattctttataggtcattccaatgtaattttgt |
388 |
Q |
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| T |
9039223 |
ttacactagcttaatctgctcaagcgatgactccacatcaatctcattgccaccatttgctaccaatgattctttataggtcattccaatgtaattttgt |
9039124 |
T |
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| Q |
389 |
ggattttcatcatcaacaaattctgtacccgggacaatgaatttgtctaacgaaggtccatgaagggtaacaacagagatccttt |
473 |
Q |
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| T |
9039123 |
ggattttcatcatcaacaaattctgtaccagggacaatgaatttgtctaacgaaggcccatgaagagtaacaacagagatccttt |
9039039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 299 - 473
Target Start/End: Complemental strand, 9048651 - 9048477
Alignment:
| Q |
299 |
ttaatttgttcaagtgatgattgcaccccgatctcattgcccccatttgctttcaaggattctttataggtcattccaatgtaattttgtggattttcat |
398 |
Q |
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| T |
9048651 |
ttaatttgctcaagtgatgactccacatcaatcacattgccaccatttgctaccaaggattctttatatgtcattccaatgtaattcattggatttttat |
9048552 |
T |
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| Q |
399 |
catcaacaaattctgtacccgggacaatgaatttgtctaacgaaggtccatgaagggtaacaacagagatccttt |
473 |
Q |
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| T |
9048551 |
catcaacaaattctgtagctggggcaatgaatttgtctaacgaaggtccatgaagagtaacaacagagatccttt |
9048477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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