View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_1 (Length: 816)
Name: NF8989_low_1
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 178 - 717
Target Start/End: Original strand, 10330267 - 10330797
Alignment:
| Q |
178 |
gtggagaaactctaagaaaaaggttgctattatgacatcatcattcctaatggagatagaaaaatatttggttttgtttatgtattataaatttattgga |
277 |
Q |
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| T |
10330267 |
gtggagaaactctaagaaaaaggttgctattatgacatcatcattcctaatggagatagaaaaatattttgttttgtttatgtattataaatttattgga |
10330366 |
T |
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| Q |
278 |
acaaaatgttagtttgcatttgcaaatatttaccaatgtctatagttatataataagattgaacaatcatttttatccttaaatatgcgagattatataa |
377 |
Q |
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| T |
10330367 |
acaaaatgttagtttgcatttgcaaatacttaccaatgtctatagttat---ataagattgaacaatcatttttatccttaaatatgtgagatgat---- |
10330459 |
T |
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| Q |
378 |
attacaataata-ataacacatgtatcaggagttggtgtcacctttctttccttttcctttcttcaatagatatccaccatgttttcctttaggtgttgt |
476 |
Q |
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| T |
10330460 |
atcgctataatatataa---ataaat-aaaaattggtgtcacctttctttccttttcccttcttcaatagatatccaccatgttttcctttaggtgttgt |
10330555 |
T |
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| Q |
477 |
tctctcttttacaacatcaccaaaaacaataatgaataaatgcgagtactctttagtttgacaaacaagaaaaattaatagtaaagaaacaaacnnnnnn |
576 |
Q |
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| T |
10330556 |
cctctcttttaccacatcaccaaaaacaataatgaataaatgcgattactctttagtttgacaaacaagaaaaattaatagtaaagaaacaaactttttt |
10330655 |
T |
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| Q |
577 |
nngacgcataag-nnnnnnnnttattttaatgcgttaaagctggggaagggattcatgaaaggaaatcaactataaagaataaagaaaaggctgaaaagg |
675 |
Q |
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| T |
10330656 |
tagacgcataagaaaaaaaaaatattttaatgcgttaaagctggggaagggattcatgaaaggaaatcaaccataaagaataaagaaaaggctgaaaagg |
10330755 |
T |
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| Q |
676 |
gaaacaccaaactttcttttaagaagcactacccgttatttt |
717 |
Q |
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| T |
10330756 |
gaaacaccaaactttcttttaagaagcactatccgttatttt |
10330797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10330014 - 10330123
Alignment:
| Q |
8 |
gagtttggtgttggagaatactgaaatgacgatatcgaggacttggaagcattttccaaggttaagaaaataccttcattgatctttagatagagga-tt |
106 |
Q |
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| T |
10330014 |
gagtttggtgttggagaatactgaaatgacgacatcgaggacttggaagcattttccaaggttaagaaaataccttcattgat-tttagatagaggattt |
10330112 |
T |
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| Q |
107 |
catgttgctgg |
117 |
Q |
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| T |
10330113 |
catgttgctgg |
10330123 |
T |
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