View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_16 (Length: 524)
Name: NF8989_low_16
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 55028194 - 55028704
Alignment:
| Q |
1 |
cttcccgttcttcatcagcctcatcttcatcctcatcctcttcagcttcttcaattgtatctcaagatcaggacctcggttttcgcatcgagttggattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028194 |
cttcccgttcttcatcagcctcatcttcatcctcatcctcttcagcttcctcaattgtatctcaagatcaggacctcggttttcgcatcgagttggattg |
55028293 |
T |
|
| Q |
101 |
gtcatcatcggaggatgaagatcaggttgctcttaagcttcaatcgcaactcatggtggcgttaccgatgccgcaggatactgttgtaattgagctgacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028294 |
gtcatcatcggaggatgaagatcaggttgctcttaagcttcaatcgcaactcatggtggcgttaccgatgccgcaggatactgttgtaattgagctgacg |
55028393 |
T |
|
| Q |
201 |
gctcgtgaagaggatgaagatgcggtggatttggttatgaaggttgttaagagaagagatccgcttagagctattaccatggctaaggctgttaattctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55028394 |
cctcgtgaagaggatgaagatgcggtggatttggttatgaaggttgttaagagaagagatccgcttagagctattaccatggctaaggctgtttattctg |
55028493 |
T |
|
| Q |
301 |
gtcaacagactgatggcactggtgttttgacacgattgttgcgttctgatttggtttcaacggcgccggaagttgttgatgctggagttcccggtagtgg |
400 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028494 |
ggtcacagactgatggcactggtgttttgacacgattgttgcgttctgatttggtttcaacggcgccggaagttgttgatgctggagttcccggtagtgg |
55028593 |
T |
|
| Q |
401 |
tggtggtcatcattggacgagtcttgctgtgcttagtatttgtggctgtggcttgtcggtgagctttattttctcgttattcaatgctagttcaagttca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55028594 |
tggtggtcatcattggacgagtcttgctgtgcttagtatttgtggctgtggcttgtcggtgagctttattttctcgttattcaatgctagttcaagttca |
55028693 |
T |
|
| Q |
501 |
agttttgatgt |
511 |
Q |
| |
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||||||||||| |
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| T |
55028694 |
agttttgatgt |
55028704 |
T |
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