View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_19 (Length: 466)
Name: NF8989_low_19
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 26011134 - 26010729
Alignment:
| Q |
16 |
acatcatttcgtgaaataaatgtgagtgttaaacattttgagtcatctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatct |
115 |
Q |
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| T |
26011134 |
acatcatttcgtgaaataaatgtgagtgttatacattttgagtcatctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatct |
26011035 |
T |
|
| Q |
116 |
attattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaataattaataactcataaatctatcga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
26011034 |
attattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaacaattaataactca--aatctat--- |
26010940 |
T |
|
| Q |
216 |
aaacacagaaggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatcaatggatatcataagccacaatgcgttttctctata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
26010939 |
----------ggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatgaatggatatcacaagccacaatgcgttttctctata |
26010850 |
T |
|
| Q |
316 |
aactctggtaatggagagaacgtggccattcaacaagaggtgtattaaagcaccaactcaacgtaatagtagctagcctaacatacaaaaatttattttg |
415 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26010849 |
aactctggtaatggaga--acgtggccattcaacaagaggtgtattaaagcaccaactcaacgtaatagtagctagcctaacatacaaaaatgtattttg |
26010752 |
T |
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| Q |
416 |
atttcaagtgcaccaataacata |
438 |
Q |
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||||||||||||||||||||||| |
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| T |
26010751 |
atttcaagtgcaccaataacata |
26010729 |
T |
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