View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8989_low_20 (Length: 465)
Name: NF8989_low_20
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 19)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Complemental strand, 32306830 - 32306389
Alignment:
| Q |
8 |
atggacatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaat |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32306830 |
atggccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaat |
32306731 |
T |
|
| Q |
108 |
ttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306730 |
ttgctaaactagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatca |
32306631 |
T |
|
| Q |
208 |
aggttagacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306630 |
aggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgag |
32306531 |
T |
|
| Q |
308 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32306530 |
ccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaa |
32306431 |
T |
|
| Q |
408 |
tgcttgcatgtatgacatccctttgtcactactagagtgatg |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306430 |
tgcttgcatgtatgacatccctttgtcactactagagtgatg |
32306389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 32310955 - 32310533
Alignment:
| Q |
13 |
catcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgct |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32310955 |
catcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgct |
32310856 |
T |
|
| Q |
113 |
aaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32310855 |
aaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcgaggtt |
32310756 |
T |
|
| Q |
213 |
agacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatc |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310755 |
agacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatc |
32310656 |
T |
|
| Q |
313 |
agctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgctt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310655 |
agctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgctt |
32310556 |
T |
|
| Q |
413 |
gcatgtatgacatccctttgtca |
435 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32310555 |
gcatgtatgacatccctttgtca |
32310533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 38 - 449
Target Start/End: Original strand, 32786342 - 32786753
Alignment:
| Q |
38 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
137 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32786342 |
agctgtcactttacatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagagaacaaatttgctaaaccagaatgaaatatatgaaccg |
32786441 |
T |
|
| Q |
138 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786442 |
actcacttaagagcttacaagatgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32786541 |
T |
|
| Q |
238 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786542 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
32786641 |
T |
|
| Q |
338 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcact |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786642 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcact |
32786741 |
T |
|
| Q |
438 |
actagagtgatg |
449 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32786742 |
actagagtgatg |
32786753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 38 - 435
Target Start/End: Original strand, 32563891 - 32564287
Alignment:
| Q |
38 |
agctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaacca |
137 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
32563891 |
agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaaaa-aacaaattttctaaaccagaatgaaatatatgaacca |
32563989 |
T |
|
| Q |
138 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32563990 |
actcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttcaagtcaaaacatcaaggttagacaatttcaacataacccttgcg |
32564089 |
T |
|
| Q |
238 |
aaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
337 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564090 |
aaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataacc |
32564189 |
T |
|
| Q |
338 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtca |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564190 |
ctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatgacatccctttgtca |
32564287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 50 - 433
Target Start/End: Original strand, 28213918 - 28214301
Alignment:
| Q |
50 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
28213918 |
acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagagaacaaatttgctaaaccagaatgaaatatatgaaccaactcgcttaaga |
28214017 |
T |
|
| Q |
150 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccga |
249 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
28214018 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcatcataacccttgcgaaatccatccga |
28214117 |
T |
|
| Q |
250 |
aaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctca |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214118 |
aaggttgatccgtcatctgaagcataagcagaaaccaatttggctgtcttctcttcagccatcagctgttgatcagcaaacaataaccctcttcctctca |
28214217 |
T |
|
| Q |
350 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt |
433 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28214218 |
acaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt |
28214301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 83 - 435
Target Start/End: Original strand, 32813598 - 32813950
Alignment:
| Q |
83 |
aaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
182 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813598 |
aaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctg |
32813697 |
T |
|
| Q |
183 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32813698 |
accttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaa |
32813797 |
T |
|
| Q |
283 |
accaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813798 |
accaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatg |
32813897 |
T |
|
| Q |
383 |
ctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtca |
435 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813898 |
ctccagatggtactgcagatgacaatgcttgcatgtatgacatccctttgtca |
32813950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 50 - 433
Target Start/End: Complemental strand, 28222366 - 28221983
Alignment:
| Q |
50 |
acatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcacttaaga |
149 |
Q |
| |
|
||||||| ||||||||| |||||||||| | |||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
28222366 |
acatggctaaaactaccatcaaatgtgtgtaagaaacttacataggaagagaaccaatttgctaagccagaatgaaatatatgaaccaactcgcttaaga |
28222267 |
T |
|
| Q |
150 |
gcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatccga |
249 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28222266 |
gcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccga |
28222167 |
T |
|
| Q |
250 |
aaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcagcaaacaataaccctcttcctctca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222166 |
aaggttgatccgtcatctgaagcataagcaaaaaccaatatggcagtcttctcttaagccatcagctgttgatcagcaaacaataaccctcttcctctca |
28222067 |
T |
|
| Q |
350 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgt |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28222066 |
acaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacatccctttgt |
28221983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 47 - 325
Target Start/End: Original strand, 32792734 - 32793012
Alignment:
| Q |
47 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatgaaatatatgaaccaactcactta |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792734 |
tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagagaacaaatttgataaactagaatgaaatatatgaaccaactcactta |
32792833 |
T |
|
| Q |
147 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcaaaatccatc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32792834 |
agagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatc |
32792933 |
T |
|
| Q |
247 |
cgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792934 |
cgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatcag |
32793012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 283
Target Start/End: Original strand, 32799379 - 32799638
Alignment:
| Q |
24 |
ataaattctgtaaaagctgtaactttacatggccaaaactaccctcaaatgtgtatgagaaacttacatcggaagagaacaaatttgctaaactagaatg |
123 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32799379 |
ataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagagaacaaatttgctaaactagaatg |
32799478 |
T |
|
| Q |
124 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799479 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
32799578 |
T |
|
| Q |
224 |
acataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa |
283 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799579 |
acataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa |
32799638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 118 - 431
Target Start/End: Complemental strand, 28177707 - 28177383
Alignment:
| Q |
118 |
agaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagaca |
217 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28177707 |
agaattaaatatatcaaccaactcagttaagaacttataatttgggaacaattcagacgaacctgaccttgatttccagtcaaaacatcaagattagaca |
28177608 |
T |
|
| Q |
218 |
attt------caacataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccat |
311 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| || ||| | ||||| |||||| |
|
|
| T |
28177607 |
atttgaactccaacaccacccttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaacctagcactgctctctccagccat |
28177508 |
T |
|
| Q |
312 |
cagctgttgatcagcaaacaata-----accctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgaca |
406 |
Q |
| |
|
||||||||||| ||| |||| || |||||||||||| || |||||| |||| | ||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
28177507 |
cagctgttgattagcgaacagtagccctcccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgaca |
28177408 |
T |
|
| Q |
407 |
atgcttgcatgtatgacatcccttt |
431 |
Q |
| |
|
| ||||||||| ||||||| |||| |
|
|
| T |
28177407 |
acgcttgcatgcctgacatcacttt |
28177383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 124 - 340
Target Start/End: Complemental strand, 28159032 - 28158816
Alignment:
| Q |
124 |
aaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttca |
223 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| || ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
28159032 |
aaatatatcaaccaactcagttaagaacttataatttcggaacaattcagacgaacctgacctttatttccagtcaaaacatcaatattagacaatttca |
28158933 |
T |
|
| Q |
224 |
acataacccttgcaaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctggcagtcttctcttgagccatcagctgttgatc |
323 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||| |||||| |||||| |||||||||| |
|
|
| T |
28158932 |
acaccacccttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatctagcagtgttctctccagccatgagctgttgatt |
28158833 |
T |
|
| Q |
324 |
agcaaacaataaccctc |
340 |
Q |
| |
|
||| |||| || ||||| |
|
|
| T |
28158832 |
agcgaacagtagccctc |
28158816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 28171876 - 28171757
Alignment:
| Q |
120 |
aatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaat |
219 |
Q |
| |
|
|||||||||||| ||||||| || || ||| |||| || |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28171876 |
aatgaaatatatcaaccaacgcagttcagaacttataatttgggaacaattcagatgaacctgaccttgatttccagtcaaaacatcaacattagacaat |
28171777 |
T |
|
| Q |
220 |
ttcaacataacccttgcaaa |
239 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
28171776 |
ttcaacaccacccttgcaaa |
28171757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 28161798 - 28161723
Alignment:
| Q |
161 |
gggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgc |
236 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
28161798 |
gggaacaattcagacaaacctgaccttgatttccagtcaaaacatcaatattagacaatttcaacacaatccttgc |
28161723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
| Q |
367 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
431 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28158788 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28158724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
| Q |
367 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
431 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28169357 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28169293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 28183206 - 28183168
Alignment:
| Q |
393 |
cactgcagatgacaatgcttgcatgtatgacatcccttt |
431 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
28183206 |
cactgcagatgacaacgcttccatgtatgacatcccttt |
28183168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 32813552 - 32813602
Alignment:
| Q |
13 |
catcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaact |
63 |
Q |
| |
|
|||||||||||||||||||||||| | ||| | ||||||||||||||||| |
|
|
| T |
32813552 |
catcaaaatcaataaattctgtaacatttgtcattttacatggccaaaact |
32813602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 28147881 - 28147825
Alignment:
| Q |
168 |
attcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaa |
224 |
Q |
| |
|
|||||||| || |||||||||| ||| |||||| ||||||| |||||||||||||| |
|
|
| T |
28147881 |
attcagaccaatctgaccttgacttcaagtcaatacatcaaaattagacaatttcaa |
28147825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 32317567 - 32317504
Alignment:
| Q |
367 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
431 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||| |||||| |||||| |||||||| |
|
|
| T |
32317567 |
tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatcccttt |
32317504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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