View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8989_low_23 (Length: 416)
Name: NF8989_low_23
Description: NF8989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8989_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 47564621 - 47565025
Alignment:
| Q |
18 |
aagaaggcctcttcaacatattcaaagagaatccaaagctttcaatcttgcttgatgcatttttaacaacattatcatgatgatatatttccaacttggg |
117 |
Q |
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| T |
47564621 |
aagaaggcctcttcaagatattcaaagagaatccaaagctttcaatcttgcttgatgcatttttaacatcattatcatgatgatatatttccaacttggg |
47564720 |
T |
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| Q |
118 |
ttcttttgtttcttcaacatgtttctgatccattggctcagaaaaagatgttacacgtcttaccttaacttgttcttcactcttgtgatgattgttattt |
217 |
Q |
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| T |
47564721 |
ttgttttgtttcttcaacatgtttctgatccattggctcagaaaaagatgttacacgtcttaccttaacttgttcttcactcttgtgatgattgttattt |
47564820 |
T |
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| Q |
218 |
ttcatttt------gacaacaattggaacaaaatcatcacttgaatatgtaaaacgaacaaaagatatgtcatgtgggttcatttgtgagtaaactttct |
311 |
Q |
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| T |
47564821 |
ttcactttcactttgacaacaattggaacaaaatcatcacttgaatatgtaaaacgaacaaaagatatgtcatgtgggttcatttgtgagtaaactttct |
47564920 |
T |
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| Q |
312 |
tccttctttgatcaagttcagatagaagggtagaaaatttatctaagcctcttgaagcataagggttattgtccctattgttgtcttttcttttggattt |
411 |
Q |
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| T |
47564921 |
tccttctttgatcaagttcagatagaagggtagaaaatttatctaagcctcttgaagcataagggttattgtccctattgttgtcttttcttttggattt |
47565020 |
T |
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| Q |
412 |
tgatt |
416 |
Q |
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| T |
47565021 |
tgatt |
47565025 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 5145720 - 5145666
Alignment:
| Q |
262 |
aaaacgaacaaaagatatgtcatgtgggttcatttgtgagtaaactttcttcctt |
316 |
Q |
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| T |
5145720 |
aaaacgaacaaaagaaatatcatgagggttcatttgtgaataaattttctgcctt |
5145666 |
T |
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